PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_223060_fkap.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 353aa MW: 38983.1 Da PI: 7.382 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95 | 5.5e-30 | 173 | 231 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y++C++a gCpvkkkv+rs ed+++++ tYeg+Hnh+ Bv9_223060_fkap.t1 173 KDGYQWRKYGQKVTRDNPCPRAYFKCSFApGCPVKKKVQRSLEDQSMLVATYEGDHNHP 231 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-30 | 162 | 233 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.093 | 167 | 233 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-25 | 169 | 233 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-35 | 172 | 232 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-25 | 173 | 231 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDYSTWLSSP SMDNLSNANT LRLFDDAPVR DSNHLNKLDS ASTTSISNNT DDASKLWIKD 60 ETGALLEELN RVNAENKRLT EMLTVVCENY NDLKRQMVDY MTKSSSNEVN NVNKKRKTDN 120 ATLLVANNNN VETTSSSDEE DSYEKQPKEE TIKAKITRVA VRTEASDSTL ILKDGYQWRK 180 YGQKVTRDNP CPRAYFKCSF APGCPVKKKV QRSLEDQSML VATYEGDHNH PAPTQQEAAP 240 SALNRSFPLA SPASNASVVP NNITIERTKP KSNANNVNET TATATTTTTT TTNNNNKTTL 300 NNTTINPLSK FGSPEFQKLL AEQMASSLTK DPNFTAALAA AITGRFVKQS SSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 157 | 233 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB081952 | 4e-98 | AB081952.1 Spinacia oleracea Spwrky-1 mRNA for WRKY transcription factor 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010691587.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 isoform X2 | ||||
Swissprot | Q9SAH7 | 5e-88 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | Q76LA9 | 1e-138 | Q76LA9_SPIOL; WRKY transcription factor 1 | ||||
STRING | XP_010691587.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-77 | WRKY DNA-binding protein 40 |