PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_218350_wuan.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 313aa    MW: 36058 Da    PI: 9.4091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_218350_wuan.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.6e-1731117698
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         +p + l++++ ++p +fa+++++++  s+  ++  ++  sW++k+   kk+++  l++GW +Fvk+n + +gD+++Fk++g+ ef  +v +
  Bv9_218350_wuan.t1  31 MPTSFLQESMQRIPSEFASKFSSEP--STFASFSVPNHSSWTIKV--IKKKNKLQLSTGWDRFVKDNSIHDGDMMIFKYKGNCEF--KVNI 115
                         57888888999********998775..44699999**********..88888999**************************9999..9999 PP

                         E- CS
                  B3  97 fr 98 
                         f+
  Bv9_218350_wuan.t1 116 FD 117
                         87 PP
2B339.41.1e-122202911388
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         ++ l +p + ++++++    +  l++ed++gr+We ++  +k + r+ lt GWk+F+k n +++ D +v +++ ++
  Bv9_218350_wuan.t1 220 RNELLIPSDVIRTFNIH--FDEALSVEDPKGRKWEARIVTWKDG-RTRLT-GWKQFCKYNLVRDQDACVCEFIPSN 291
                         46699999999999766..5568***************878775.67899.******************9977332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.92E-2023118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2124118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-1425117No hitNo description
PROSITE profilePS5086313.21126119IPR003340B3 DNA binding domain
SMARTSM010193.1E-1227119IPR003340B3 DNA binding domain
PfamPF023623.9E-1530117IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-16206304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.798208306IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15208304IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-4212306IPR003340B3 DNA binding domain
PfamPF023621.1E-9220291IPR003340B3 DNA binding domain
CDDcd100178.43E-10223304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSSRPYSTRK KSACSPNDTD EIKSWRFLRV MPTSFLQESM QRIPSEFASK FSSEPSTFAS  60
FSVPNHSSWT IKVIKKKNKL QLSTGWDRFV KDNSIHDGDM MIFKYKGNCE FKVNIFDPVG  120
NEIVQCHNYS ESGKRKIGSC SESRQEVTSS INDEKEEKVC KEYHGRNPCS ETKLRNKNLS  180
SPMGSKQKTA TNHEESSSKL ETLLLSLENP FFFAKTIRLR NELLIPSDVI RTFNIHFDEA  240
LSVEDPKGRK WEARIVTWKD GRTRLTGWKQ FCKYNLVRDQ DACVCEFIPS NGTTCYAIKV  300
HIFRDHKMPA TVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107213.10.0PREDICTED: B3 domain-containing protein At4g34400-like
STRINGXP_010691759.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-18B3 family protein