PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199510_gohw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 480aa    MW: 54219.8 Da    PI: 9.1285
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199510_gohw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-071246338
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                        rW t+E+++l   v ++G+++W+++a +++ +Rtl+
  Bv8_199510_gohw.t1 12 RWGTWEELILCGSVLRHGSHNWDAVALELQ-TRTLY 46
                        9*****************************.***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.920.101.8E-19259396IPR001487Bromodomain
SuperFamilySSF473701.83E-19263379IPR001487Bromodomain
SMARTSM002978.1E-17274378IPR001487Bromodomain
PfamPF004391.9E-11283362IPR001487Bromodomain
PROSITE profilePS5001410.539289359IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MVEEEGGDDI VRWGTWEELI LCGSVLRHGS HNWDAVALEL QTRTLYPYHF TPQVCKAKYE  60
MLQEGYSDCS AWFEELRKKR VNELRIELEK SEESIGSLET KLETLKSEKA VCSYPDYGCS  120
AAESAQALCK LGGNESAEKE ASRDGLSAGS FTQETQTTWL QQCQAAATEA SVEECERKPL  180
DLGPSIRLEK FPSIEKLAET MRSEHGVNIR RRRGKRKRKD LNKEGKEGSV GENNLMCSPD  240
SVMTTTSQVE EKVISGYVQP ETSPDANDQN PSTSKQQTDD FIKIFDSIME NEHASVFRRR  300
LDSQKRARYK RIIRQHMDLD TIRLRIANKC ISSTLELLRD LLLLANNALV FYSKCTREYK  360
CALVFRDLVT KVLHQHYKTK VAPEETPKAP MQKPPAKPRS ARPFNCKFHK KTVNAPGCVT  420
DAHKVYSHPP NVVCSPSSAE SFALTKKAQG KRGKVARVKR GNAGIQAETP MKVRKKARVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201212RSEHGVNIRRRR
2210216RRRGKRK
3211219RRGKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696581.10.0PREDICTED: uncharacterized protein LOC104909087 isoform X1
TrEMBLA0A0J8BA490.0A0A0J8BA49_BETVU; Uncharacterized protein
STRINGXP_010696581.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-16DNA-binding bromodomain-containing protein