PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_197150_tysy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 283aa    MW: 31024.9 Da    PI: 4.8118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_197150_tysy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-194898155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr++  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Bv8_197150_tysy.t1 48 PVYRGVRRRA-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 98
                        68*****777.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-134898IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-3249107IPR001471AP2/ERF domain
SMARTSM003803.5E-3649112IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2149107IPR016177DNA-binding domain
PROSITE profilePS5103223.6749106IPR001471AP2/ERF domain
CDDcd000184.33E-3350108No hitNo description
PRINTSPR003673.2E-105061IPR001471AP2/ERF domain
PRINTSPR003673.2E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MASPNDHDHH IYQENSDTSE EMIMIAASTT IDQHKNRNNK RQRDTKHPVY RGVRRRAWGK  60
WVSEIREPRK KSRIWLGTFA TPEMAARAHD VAALSIKGTS AVLNFPDLAH SLPRPVSNSP  120
RDVQFAAAKA AAMDIDTATS TANSNSTSTS STGAADTTPA GITSQQEHVT MSSTSTADAT  180
TDVAPASPST SSSTALSFES TAVSGDEEHL LGEIVELPSL EDESGFFDSS EFVDKTWLMY  240
EYYDSDPLLQ CWVNNGNIST TEGYFGEQGL NYNTSFEALL WHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18451061072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5661070.0HM566107.1 UNVERIFIED: Beta vulgaris tiny-like protein 2-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688291.10.0PREDICTED: ethylene-responsive transcription factor ERF043
TrEMBLA0A0K9R3G08e-95A0A0K9R3G0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688291.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-47ERF family protein