PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_195410_iqhg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 482aa    MW: 53261.4 Da    PI: 5.2765
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_195410_iqhg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.15.5e-1231004601374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                         lv++Ll+cA+a++ g+++la+ ++ ++s+    + +++  + ++a yf  AL++rl++ ++++       e      +++   ++ f+e++
  Bv8_195410_iqhg.t1 100 LVHALLTCADAIQRGEFQLATFFIGEMSNGlmtRVNTACGIGKVAGYFIDALSRRLYEPSQGMG----LAEPG---LVSNEVLYHHFYEAC 183
                         689************************98754455566799*****************444444....33333...4445567889***** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         P+lkf+h+taNqaIlea+eg+ +vHiiDf++++GlQWpaL+qaLa R++gppslR+T+++ p+s+ +e  +etg rLa++A++++v+f+f+
  Bv8_195410_iqhg.t1 184 PYLKFAHFTANQAILEAFEGQACVHIIDFGLMYGLQWPALIQALALRRGGPPSLRLTAISTPSSNGHEFFHETGLRLAQLARSTNVRFSFK 274
                         ******************************************************************************************* PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         v++++rled++ ++++++p+E++aVn+++qlhr+l   +s     +++L+ +ksl+Pk+v+v+eq+a+hn+++Fl rf+eal++ys++fds
  Bv8_195410_iqhg.t1 275 VVTTSRLEDIKSWMFQTNPEEVVAVNSIFQLHRVL---GSNI---NSILDSIKSLNPKIVTVAEQDANHNQPEFLLRFTEALHFYSTMFDS 359
                         **********************************9...4433...47******************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         lea    + e ++ + + +++rei+n+v+ceg++r+erhe l+kWr rl++aG+kp++++++a kqa++ll  ++ +gy v+e++g+l+lg
  Bv8_195410_iqhg.t1 360 LEAC---QLEVAKPLAETFIQREICNIVCCEGSSRVERHEPLAKWRTRLSQAGLKPLHMGHNAFKQANMLLTLCSAEGYCVQESDGCLTLG 447
                         *998...457777777777************************************************************************ PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++rpL+++SaW+
  Bv8_195410_iqhg.t1 448 WHNRPLIAASAWQ 460
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.57274440IPR005202Transcription factor GRAS
PfamPF035141.9E-120100460IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MGSHELRGSP FPASDIDGLS GDYQLTSWVN TFMSEIGSLP TLGTGFYPGL SYSDPGQNEL  60
MKVIGDTWKD QIEEQQPSEE SQLVPLTVVS DLEEDTGIRL VHALLTCADA IQRGEFQLAT  120
FFIGEMSNGL MTRVNTACGI GKVAGYFIDA LSRRLYEPSQ GMGLAEPGLV SNEVLYHHFY  180
EACPYLKFAH FTANQAILEA FEGQACVHII DFGLMYGLQW PALIQALALR RGGPPSLRLT  240
AISTPSSNGH EFFHETGLRL AQLARSTNVR FSFKVVTTSR LEDIKSWMFQ TNPEEVVAVN  300
SIFQLHRVLG SNINSILDSI KSLNPKIVTV AEQDANHNQP EFLLRFTEAL HFYSTMFDSL  360
EACQLEVAKP LAETFIQREI CNIVCCEGSS RVERHEPLAK WRTRLSQAGL KPLHMGHNAF  420
KQANMLLTLC SAEGYCVQES DGCLTLGWHN RPLIAASAWQ VRIDKDGISL THDGSSSSSS  480
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-579346212381Protein SCARECROW
5b3h_A4e-579346211380Protein SCARECROW
5b3h_D4e-579346211380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688103.10.0PREDICTED: DELLA protein GAI1
SwissprotQ8S4W71e-129GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0K9QD550.0A0A0K9QD55_SPIOL; Uncharacterized protein
STRINGXP_010688103.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-128GRAS family protein