PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_195160_ahoy.t3
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 509aa    MW: 57099.2 Da    PI: 5.7645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_195160_ahoy.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15174262197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lpkkf+++h   + ++ +++l de g++ +  +    ++  + l++GW++F  +++L egD++vF+l+   +f 
  Bv8_195160_ahoy.t3 174 FVKLMMKSHVSGGFWLGLPKKFCDDHL--PMCDCKVVLVDEPGKESSTVY--LAGK--VGLSGGWRGFSIEHKLLEGDVLVFHLIAPAKF- 257
                         89*********************9995..457889*****9999998888..4544..66***********************9986666. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          ++ ++
  Bv8_195160_ahoy.t3 258 -KIYIV 262
                         .66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-22167263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-18167264IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-24172263No hitNo description
PROSITE profilePS5086311.674174265IPR003340B3 DNA binding domain
PfamPF023622.0E-13174262IPR003340B3 DNA binding domain
SMARTSM010197.7E-19174265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MQGKCKSAIS KKELKLSLVA KRLSMLQDDD HENQNQLVVS LCPEIPVECE STKPSKDTSD  60
DTLSEDIIIS KSSQNRTKYG SHKRGRVISD DESSEDDREL IVCIQPTNKE RSKPKRIKSI  120
ASCNNENRKA TNNPGAQKRQ SLDLSDPIST GRKSSPMKRA EEIQANMSTE YPSFVKLMMK  180
SHVSGGFWLG LPKKFCDDHL PMCDCKVVLV DEPGKESSTV YLAGKVGLSG GWRGFSIEHK  240
LLEGDVLVFH LIAPAKFKIY IVREHDFGEV DGALSLLTLD PGLGQQKLEE NTQKVLQIED  300
NYPMVDYLSQ SSSDVDLGSE VLDGLRFSDS DIDFERVESF ENFNIIVDGL IIDSKFSDTT  360
RKKYYELCCC ERSFLHETFL KGLNCNLVVG IISETINIAD AIKSWKNGST SHEDLQIWEK  420
TLKGFELLGM KVGFLLARIN QLLGRSSELK ADESDRLKES IIKRTLAGER MKAIEDKFTQ  480
LKDIMEKINF EMDAEIKMAS ARKLGIAAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688081.10.0PREDICTED: B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A0K9RF490.0A0A0K9RF49_SPIOL; Uncharacterized protein
STRINGXP_010688081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-41B3 family protein