PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_195160_ahoy.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 507aa    MW: 56814.9 Da    PI: 5.6055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_195160_ahoy.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15172260197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lpkkf+++h   + ++ +++l de g++ +  +    ++  + l++GW++F  +++L egD++vF+l+   +f 
  Bv8_195160_ahoy.t2 172 FVKLMMKSHVSGGFWLGLPKKFCDDHL--PMCDCKVVLVDEPGKESSTVY--LAGK--VGLSGGWRGFSIEHKLLEGDVLVFHLIAPAKF- 255
                         89*********************9995..457889*****9999998888..4544..66***********************9986666. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          ++ ++
  Bv8_195160_ahoy.t2 256 -KIYIV 260
                         .66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-22165261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-18165262IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-24170261No hitNo description
SMARTSM010197.7E-19172263IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674172263IPR003340B3 DNA binding domain
PfamPF023622.0E-13172260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGKCKSAISK KELKLSLVAK RLSMLQDDDH ENQNQLVVSL CPEIPVECES TKPSKDTSDD  60
TLSEDIIISK SSQNRTKYGS HKRGRVISDD ESSEDDRELI VCIQPTNKES KPKRIKSIAS  120
CNNENRKATN NPGAQKRQSL DLSDPISTGR KSSPMKRAEE IQANMSTEYP SFVKLMMKSH  180
VSGGFWLGLP KKFCDDHLPM CDCKVVLVDE PGKESSTVYL AGKVGLSGGW RGFSIEHKLL  240
EGDVLVFHLI APAKFKIYIV REHDFGEVDG ALSLLTLDPG LGQQKLEENT QKVLQIEDNY  300
PMVDYLSQSS SDVDLGSEVL DGLRFSDSDI DFERVESFEN FNIIVDGLII DSKFSDTTRK  360
KYYELCCCER SFLHETFLKG LNCNLVVGII SETINIADAI KSWKNGSTSH EDLQIWEKTL  420
KGFELLGMKV GFLLARINQL LGRSSELKAD ESDRLKESII KRTLAGERMK AIEDKFTQLK  480
DIMEKINFEM DAEIKMASAR KLGIAAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688082.10.0PREDICTED: B3 domain-containing protein Os01g0234100 isoform X3
TrEMBLA0A0K9RF490.0A0A0K9RF49_SPIOL; Uncharacterized protein
STRINGXP_010688081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-41B3 family protein