PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_195160_ahoy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 508aa    MW: 56971.1 Da    PI: 5.7645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_195160_ahoy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15173261197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lpkkf+++h   + ++ +++l de g++ +  +    ++  + l++GW++F  +++L egD++vF+l+   +f 
  Bv8_195160_ahoy.t1 173 FVKLMMKSHVSGGFWLGLPKKFCDDHL--PMCDCKVVLVDEPGKESSTVY--LAGK--VGLSGGWRGFSIEHKLLEGDVLVFHLIAPAKF- 256
                         89*********************9995..457889*****9999998888..4544..66***********************9986666. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          ++ ++
  Bv8_195160_ahoy.t1 257 -KIYIV 261
                         .66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-22166262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-18166263IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-24171262No hitNo description
SMARTSM010197.7E-19173264IPR003340B3 DNA binding domain
PfamPF023622.0E-13173261IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674173264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGKCKSAISK KELKLSLVAK RLSMLQDDDH ENQNQLVVSL CPEIPVECES TKPSKDTSDD  60
TLSEDIIISK SSQNRTKYGS HKRGRVISDD ESSEDDRELI VCIQPTNKER SKPKRIKSIA  120
SCNNENRKAT NNPGAQKRQS LDLSDPISTG RKSSPMKRAE EIQANMSTEY PSFVKLMMKS  180
HVSGGFWLGL PKKFCDDHLP MCDCKVVLVD EPGKESSTVY LAGKVGLSGG WRGFSIEHKL  240
LEGDVLVFHL IAPAKFKIYI VREHDFGEVD GALSLLTLDP GLGQQKLEEN TQKVLQIEDN  300
YPMVDYLSQS SSDVDLGSEV LDGLRFSDSD IDFERVESFE NFNIIVDGLI IDSKFSDTTR  360
KKYYELCCCE RSFLHETFLK GLNCNLVVGI ISETINIADA IKSWKNGSTS HEDLQIWEKT  420
LKGFELLGMK VGFLLARINQ LLGRSSELKA DESDRLKESI IKRTLAGERM KAIEDKFTQL  480
KDIMEKINFE MDAEIKMASA RKLGIAAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688083.10.0PREDICTED: B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A0K9RF490.0A0A0K9RF49_SPIOL; Uncharacterized protein
STRINGXP_010688081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-41B3 family protein