PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_194200_tpei.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | YABBY | ||||||||
Protein Properties | Length: 204aa MW: 23157.1 Da PI: 7.9727 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 220.8 | 3.9e-68 | 8 | 177 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk.veeenlksnvekeesa 92 + sseq+Cy+ CnfCn +lavsvP + +f +vtvrCGhCt+l sv++a a + a++ + +++ + ++ + + + e +++ ++++++ Bv8_194200_tpei.t1 8 AVPSSEQLCYIPCNFCNIVLAVSVPCNNMFDIVTVRCGHCTNLWSVDMAAAFRSFASSWQHHQQQNFHQGPNCGnTGEYKIDNLGSSSKCN 98 5689********************************************9988776665543444444433343303344555555555555 PP YABBY 93 stsvss.eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 t++++ +++s ++++++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Bv8_194200_tpei.t1 99 YTNKATtMRISPPMNNNTSEERIINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 177 444443033455566666666679*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-70 | 11 | 177 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.89E-8 | 120 | 170 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 125 | 171 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTSCVDQAVP SSEQLCYIPC NFCNIVLAVS VPCNNMFDIV TVRCGHCTNL WSVDMAAAFR 60 SFASSWQHHQ QQNFHQGPNC GNTGEYKIDN LGSSSKCNYT NKATTMRISP PMNNNTSEER 120 IINRPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE 180 TNNQAKLDED SQKHLMPRTA LLNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010687959.1 | 1e-154 | PREDICTED: axial regulator YABBY 5 isoform X1 | ||||
Swissprot | Q8GW46 | 5e-78 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0K9QZA0 | 1e-120 | A0A0K9QZA0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687959.1 | 1e-153 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-80 | YABBY family protein |
Publications ? help Back to Top | |||
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