PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_191380_zjjc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 413aa    MW: 45486.4 Da    PI: 6.706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_191380_zjjc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.8e-0785107326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         t++C ++++   C +G  CkF H+
  Bv8_191380_zjjc.t1  85 TKICEHWMK-NSCVHGKECKFLHS 107
                         899******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.59682109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-585107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.8E-17112221IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.5E-7113152IPR001680WD40 repeat
SuperFamilySSF509781.31E-49115404IPR017986WD40-repeat-containing domain
PfamPF004002.2E-6119152IPR001680WD40 repeat
PROSITE profilePS5008215.12120161IPR001680WD40 repeat
PROSITE profilePS5029427.263120369IPR017986WD40-repeat-containing domain
PRINTSPR003206.5E-8139153IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780139153IPR019775WD40 repeat, conserved site
SMARTSM003209.1192229IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-30222403IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.4E-4236273IPR001680WD40 repeat
PfamPF004000.0014241273IPR001680WD40 repeat
PROSITE profilePS5008214.118243282IPR001680WD40 repeat
PRINTSPR003206.5E-8260274IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780260274IPR019775WD40 repeat, conserved site
SMARTSM003200.0096276313IPR001680WD40 repeat
PfamPF004000.086278312IPR001680WD40 repeat
PRINTSPR003206.5E-8300314IPR020472G-protein beta WD-40 repeat
SMARTSM003209.5317360IPR001680WD40 repeat
SMARTSM0032024363400IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGAMDELRKS PCRFAHTDVT APVNRVLRLN RSSFRESHDQ KKQNTKQQSE ECKIKKKNEV  60
KECHHEESVS ADTTTVDVEK SQCNTKICEH WMKNSCVHGK ECKFLHSWCY GDGITMVAQL  120
QGHKKAVTGI TLPENSDKLF SGSKDGTVRV WNCHTGECIG VADVGSPVES LISEGPWVLA  180
GLVNSVKVWN IQSNAEFTLS TSAGQVYTMV AANGMLFAGA QDGSILVWKF NAEASSFDSI  240
SPLQGHIGAV VSLIYGANRL YSGSMDNTIR VWDLETMQCI HTLAKHSEVV MSVLCWERYL  300
ISSSLDRTLK VWAATEAGEL EVTYEHNEEH GILSLRGMHD AANKPIMLCS SNDNTVRLYE  360
LPSFVERGRI FSKQEVRGIH VGPAGLFFTG DGTGLVSVWR CSSDSTASSD KAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-27943637323Tako8
6g6n_A1e-27943637323Tako8
6g6n_B1e-27943637323Tako8
6g6n_C1e-27943637323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687795.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ21e-143C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0J7YN541e-156A0A0J7YN54_BETVU; Uncharacterized protein (Fragment)
STRINGXP_010687795.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-143zinc finger WD40 repeat protein 1