PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_189920_xoyz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HRT-like
Protein Properties Length: 419aa    MW: 46996.6 Da    PI: 9.9739
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_189920_xoyz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like512.4e-16267296130
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                         iCGvi + G +C++ PvkgRKRC +HKG+R
  Bv8_189920_xoyz.t1 267 ICGVISSEGLICSNAPVKGRKRCSKHKGRR 296
                         8****************************9 PP
2HRT-like60.62.4e-19320350131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCGvil dGs+C r+P +gRKRCeeHKGmRi
  Bv8_189920_xoyz.t1 320 ICGVILLDGSPCGRSPFPGRKRCEEHKGMRI 350
                         8*****************************7 PP
3HRT-like56.16e-18377406231
            HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         CGv l+dG+ C+rqPvkgRKRCe+HKGmR+
  Bv8_189920_xoyz.t1 377 CGVDLGDGIRCERQPVKGRKRCEQHKGMRV 406
                         *****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGGAPHGYSY PTTTTTSSTT RRLSRENFQR TKHDTAFSKW KILIGPSDWE DYEANKDGAE  60
RYRVGNLPSV CGPGLYEIAV AVCSFNSGRD VSKLDTERIV VVYLGQADNV RSRLQHYGRS  120
GSHLINGFGL FKEVFSRGYP IIYRWAPMKT KSDAEKTEAK LLERFDYAWN KVGNGARRPY  180
DVLDKIEKIS SRNSKIPKIL KMLQSLGEQK VGIQIKAEKL SLDNEPSHDN YDNFSLFDRV  240
FKFSRSQPRL VSTNPETIVE DFNQLHICGV ISSEGLICSN APVKGRKRCS KHKGRRLTSS  300
LINSKSSSSK NDVNDEVSSI CGVILLDGSP CGRSPFPGRK RCEEHKGMRI SKTMSKSMNL  360
ASVMEKHLYN IGLADCCGVD LGDGIRCERQ PVKGRKRCEQ HKGMRVDAFM CKLSSKAKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687447.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A0K9RRX00.0A0A0K9RRX0_SPIOL; Uncharacterized protein
STRINGXP_010687447.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.18e-90effector of transcription2