PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_188430_iqnu.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | Trihelix | ||||||||
Protein Properties | Length: 360aa MW: 40057.5 Da PI: 9.3324 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.3 | 2.6e-15 | 11 | 111 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt..sess 76 Wt +e++ Liea+++++er + ++ + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e k+ + e++ Bv8_188430_iqnu.t1 11 WTVEETMILIEAKKKDDERRKFNRskqtqtlttstskpITELRWKWVEEYCWGKGCFRSQNQCNDKWDNLMRDYKKVREYLKNLSdhLEET 101 **************9999887654447778888888778899*************************************999875223455 PP trihelix 77 stcpyfdqle 86 ++++ + +++ Bv8_188430_iqnu.t1 102 ENIKSYWNMD 111 6666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.445 | 3 | 81 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-5 | 6 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.4E-11 | 10 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MAMRDYRKGN WTVEETMILI EAKKKDDERR KFNRSKQTQT LTTSTSKPIT ELRWKWVEEY 60 CWGKGCFRSQ NQCNDKWDNL MRDYKKVREY LKNLSDHLEE TENIKSYWNM DKVERKDKGL 120 PTNMLPQIYQ ALFDVVERSS ISSSTTTATP STSTTVAATS MALASVSAPF LLPIPMLEMQ 180 QSPPSAVPAL QLSPPLLLPS PLLPPPSQPP PPPPPLLPHS TFISSQALPP HPSPTLELSP 240 AKRRRKEEGG GRGRGGGGVG EGASGIATHT EAAAATSLED VSSAISRSAA IISEAIQASE 300 EREERRHREM MNLHQSRLRI VESMMEINRQ GLNGLADAIN RLATSIFTWA NSHKTQQGPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 257 | GGRGRGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019106909.1 | 0.0 | PREDICTED: formin-1 isoform X2 | ||||
TrEMBL | A0A0J8BV78 | 0.0 | A0A0J8BV78_BETVU; Uncharacterized protein | ||||
STRING | XP_010687202.1 | 1e-179 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 4e-50 | Trihelix family protein |