PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_183230_kydq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

LSD

Protein Properties

Length: 318aa MW: 37344 Da PI: 4.0003

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_183230_kydq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.4e-13	229	253	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lLsYPrG+++V+C++C+tV Bv8_183230_kydq.t1 229 CGSCHRLLSYPRGSKHVQCSCCQTV 253 ************************9 PP
2	zf-LSD1	32.3	1.6e-10	267	291	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C++lL+YP+GA sVRC +C V Bv8_183230_kydq.t1 267 CGSCQVLLMYPYGALSVRCCSCRSV 291 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.7E-15	226	256	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.7E-11	229	253	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.9E-8	264	291	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.9E-8	267	291	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSGEADIVVT ESQHIPTSPP QQTPLQQPKQ EQQQQEEKEQ LQQEEKEEEQ QQEEKEQQQQ 60 QQQQQQEEQQ DEKQKEQEEE DEKQNEQQDV KQKEQQEDVK QKEQQQEDDE KQNEQQQEDV 120 KQKEQQQEDV KQKEQQEEDD EKQNEESKKE KEALEALEIE QKEERENEKE EEVQVNEQDE 180 EEETQVNEQD EEEEAQVNEK DEDEGPPPGW DSLPPPPPLS TPDRGQMVCG SCHRLLSYPR 240 GSKHVQCSCC QTVNYVLEEH QVGQVMCGSC QVLLMYPYGA LSVRCCSCRS VVYIGDHNKR 300 PPLSEQQSQA CRPFSISH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9RGW5	7e-64	A0A0K9RGW5_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-37	lsd one like 2