PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_181200_pssw.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 34000.2 Da PI: 6.08 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 7.1e-30 | 77 | 135 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++++tY+ eHnh+ Bv8_181200_pssw.t1 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRSDPNTLVVTYSYEHNHP 135 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.48E-26 | 72 | 137 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.5E-31 | 72 | 137 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-36 | 76 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.455 | 77 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-26 | 78 | 135 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEASLSDLYS NVNTYHLEDR EISSDNSGDN SPSTTTFNAA SISSPKRSRR AIQKKVVTFP 60 IKEIEGSRFK GDCTPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRSD 120 PNTLVVTYSY EHNHPWPITR NHHHQNRHNN AASATSIENT TATTTATATT SLVIPSTTIT 180 TNNTSTTTTN EKSHHKTESH DIMHDDHNNN NNILFQQNIE EALINPTDEL TWFSSDDQIL 240 ENNSFFSNLS DLDMAKIFPM REEDESLFAD LGELPECSVV FRKAAGVVGG EECSLAPTTW 300 CGTTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-19 | 54 | 137 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-19 | 54 | 137 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686240.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
TrEMBL | A0A0K9RTN9 | 1e-143 | A0A0K9RTN9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686240.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-59 | WRKY DNA-binding protein 65 |