PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv7_178700_mioy.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 119aa MW: 13787.8 Da PI: 8.8164 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 89 | 112 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr + + tC++G+ C+F+H Bv7_178700_mioy.t1 89 REATCRQYEE-NTCNRGGYCNFMHL 112 6789**9999.*************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01848 | 5.4E-19 | 42 | 64 | IPR009145 | U2 auxiliary factor small subunit |
Gene3D | G3DSA:3.30.70.330 | 7.0E-6 | 43 | 83 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 3.83E-7 | 46 | 87 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 5.4E-19 | 69 | 93 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.709 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 89 | 112 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 5.4E-19 | 104 | 116 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 119 aa Download sequence Send to blast |
MNSRSFPSPV CSSSCEFRPY FKQLCSITTT PLPITITPFH RQSKIIPVGN VYIQYLEEEQ 60 VADALRNLTR RLYSGRPIIV DFSPVTGFRE ATCRQYEENT CNRGGYCNFM HLKKINREL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 1e-20 | 48 | 114 | 104 | 170 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019102661.1 | 2e-84 | PREDICTED: splicing factor U2af small subunit A-like | ||||
Swissprot | Q9ZQW8 | 2e-33 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | A0A0J8BAT9 | 5e-83 | A0A0J8BAT9_BETVU; Uncharacterized protein | ||||
STRING | XP_010690014.1 | 6e-40 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10320.1 | 2e-07 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|