PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_178520_psnx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 959aa    MW: 108036 Da    PI: 7.2037
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_178520_psnx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.7e-1628118199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+    +  s  l++p +fa++ +    e++   led++g++W+v l  ++  g+  +++GW eF  ++ +++gDf+vF++ + s f 
  Bv7_178520_psnx.t1  28 FFKVM--FGNEFSEVLIVPPQFANTVKAL--EGQSTYLEDSTGQKWKVGL--CNVNGSLAFQNGWHEFSVDHSIEVGDFLVFHHFKGSHF- 111
                         55666..3344456699******888655..4557***************..999999*************************8877887. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v +f +
  Bv7_178520_psnx.t1 112 -LVEIFGR 118
                         .9999987 PP
2B354.12.9e-17445535199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+   + + s  l+lp kf + +++    +kt  l+d++g++Wev l  +   ++  ++kGW++F  a+g+++gDfvvF+++  s f 
  Bv7_178520_psnx.t1 445 FFKVM--LNESCSEVLILPPKFSRMFKSL--VGKTTYLKDSTGQTWEVVL--SVVEDSLGFQKGWRKFYLAHGIEQGDFVVFHYIAGSHF- 528
                         89999..555566679*******999544..4679***************..77777788*************************88999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v ++++
  Bv7_178520_psnx.t1 529 -TVEIYDR 535
                         .9998887 PP
3B335.22.2e-118939563196
                         .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++k + l+++sg+ W v +    + g  +l++GW+ F kan+++ gD++ F +d+ +++ ++v v
  Bv7_178520_psnx.t1 893 SNKKLIYLRNPSGKDWPVLC--HIRYGLQILSSGWNAFTKANNIRPGDVCAFVVDNIDKGIFRVEV 956
                         35578***************..66666678**********************97654777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.19726119IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-2126121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-2126121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-1627116No hitNo description
PfamPF023628.4E-1428118IPR003340B3 DNA binding domain
SMARTSM010197.5E-928119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-20441536IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-23442536IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-20443534No hitNo description
PROSITE profilePS5086313.267443536IPR003340B3 DNA binding domain
PfamPF023625.4E-15445535IPR003340B3 DNA binding domain
SMARTSM010192.8E-13445536IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899864959IPR003340B3 DNA binding domain
SMARTSM010190.0048866955IPR003340B3 DNA binding domain
CDDcd100171.79E-8875958No hitNo description
PfamPF023621.7E-8893954IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-11893958IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-12895957IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MEACVECSRS CLVLHRTKLD PYPIVSSFFK VMFGNEFSEV LIVPPQFANT VKALEGQSTY  60
LEDSTGQKWK VGLCNVNGSL AFQNGWHEFS VDHSIEVGDF LVFHHFKGSH FLVEIFGRSG  120
CEKPVLFGGK NYQKTREKLS RSDPGPPNIV VNRKKDHLQN VKNSPETKRV YVPREDISNK  180
RPKLAPTTDF LVESYFMTNR DVCFTREDDR SDLFDLSVFE MPEMKEDAGK RSYEISSEAD  240
RSTKERAEIL NNTVSTDPMP LNVSMPIKSI ASPQSEVSAP ANSCGRTKIG KQEHNSDENV  300
YVNSVADNLL CASAILSSIE KDPKLRNETL GRHSTSVEED KGQKDMTVNP ETPDLCVSSS  360
AASFKITYPE QKHNEPFLVL PKPLPLNVYK QGEKLGQNLV VLRDPGGRLW PNLMARDVGV  420
CDKCLRNCLL NHKRKHDLAP VVPSFFKVML NESCSEVLIL PPKFSRMFKS LVGKTTYLKD  480
STGQTWEVVL SVVEDSLGFQ KGWRKFYLAH GIEQGDFVVF HYIAGSHFTV EIYDRSAYEK  540
NFPGEESYQN KRPKTTRESD PDLYHERQPP QEYDLSDVCD VPRSHNGISP RQDDLNYASK  600
SLKVVGNVRG RENINKIPQV VPEADLLLEP CFITGRETGF AREDNREHLL DLSAFELPDF  660
STEFDRDHLS DLSTSKMTIK KVDATEDNRE HDHLSDLSIF KMTDKKVDAD HMGKLQVQGK  720
KCSQVSGALH KAQNTDASID IKKRPIIQGN GTVLSTTSQK NEVNSRSECK PVPRSSPRFD  780
MSLNAIGPLK TIRKSDTLEF SAASGYSQPP GGKMRIVKQE PKEFNKEAER NYRDLGVNLN  840
PMENNVNIIN IVKSEPVDSW ESASARITCL VPPDNESFLE LPEPLPIKGR RSSNKKLIYL  900
RNPSGKDWPV LCHIRYGLQI LSSGWNAFTK ANNIRPGDVC AFVVDNIDKG IFRVEVLKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696194.10.0PREDICTED: uncharacterized protein LOC104908741 isoform X1
STRINGXP_010696194.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-13B3 family protein