PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_175500_pqun.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 580aa    MW: 64212.4 Da    PI: 7.8744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_175500_pqun.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32227284260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkk+e++  d++++ei+Y+g+Hnh+k
  Bv7_175500_pqun.t1 227 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPMKKKIETAI-DGQITEIVYKGSHNHPK 284
                         8****************************************.***************85 PP
2WRKY1061.9e-33402460159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+a+d ++v++tYeg+Hnh+
  Bv7_175500_pqun.t1 402 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYPGCPVRKHVERAAHDLRAVITTYEGKHNHD 460
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-28217285IPR003657WRKY domain
SuperFamilySSF1182901.44E-24220285IPR003657WRKY domain
PROSITE profilePS5081122.756221285IPR003657WRKY domain
SMARTSM007742.1E-34226284IPR003657WRKY domain
PfamPF031061.1E-24227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37387462IPR003657WRKY domain
SuperFamilySSF1182901.57E-29394462IPR003657WRKY domain
PROSITE profilePS5081137.78397462IPR003657WRKY domain
SMARTSM007742.4E-39402461IPR003657WRKY domain
PfamPF031067.8E-26403460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MNTSSFTNLL KSGDNDNSSK FSDIGIRSLS DRIADRTGSG TPKFKSLPPP SIPISPPPFS  60
PSSYFAIPPG LSPTDLLDSP VLLSSSHVLP SPTTGAFSAH TFNWKSNNNN NNNNNSKNNE  120
DMNKYSDFTF QTQARTTNDV SSNMFQSSFP TEQAIRGREN QQQSWNFDDQ NKKNDQQPLN  180
QTKVMVKSEF STSQSENYNQ GNIVKYESEQ SSSFQPAQYI REQKKSDDGY NWRKYGQKQV  240
KGSENPRSYY KCTFPNCPMK KKIETAIDGQ ITEIVYKGSH NHPKPVNTRR SSSSSVAAGV  300
AFNQTSNDFH DHSLVPQRTS SGQMDSVATP ENSSISMAED EVDMGSQRSR SIGNDLDDDE  360
PDAKRWRGEV ENECMSAAPG NGSRAVREPR VVVQTTSDID ILDDGYRWRK YGQKVVKGNP  420
NPRSYYKCTY PGCPVRKHVE RAAHDLRAVI TTYEGKHNHD VPAARGSGMS RSSLGHNNSA  480
MPSMAIRPSA INYMSSNSNN NVVNSFQSNQ GIMASSLDAA GGQLSPFTLQ MLANSGFSGY  540
MNQSQFSDNM FSNSNNTTTS TTTKAKEEPK EDMLFESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35211463278Probable WRKY transcription factor 4
2lex_A4e-35211463278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685944.10.0PREDICTED: WRKY transcription factor WRKY24
SwissprotQ6B6R41e-133WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0K9QDZ70.0A0A0K9QDZ7_SPIOL; Uncharacterized protein
STRINGXP_010685944.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-107WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]