PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_174860_kqij.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WOX | ||||||||
Protein Properties | Length: 252aa MW: 29224.1 Da PI: 7.9956 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.4e-20 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eq+ +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Bv7_174860_kqij.t1 6 STRWCPTPEQVMILEEMYRGgVRTPNASQIQQITAHLslygKIEGKNVFYWFQNHKARDRQ 66 58*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 119.9 | 1.1e-38 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a+tRW+PtpeQ++iLee+y+ G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk Bv7_174860_kqij.t1 5 ASTRWCPTPEQVMILEEMYRGGVRTPNASQIQQITAHLSLYGKIEGKNVFYWFQNHKARDRQK 67 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.912 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-6 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.63E-4 | 7 | 67 | No hit | No description |
SuperFamily | SSF46689 | 9.41E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.5E-18 | 7 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSPAASTRWC PTPEQVMILE EMYRGGVRTP NASQIQQITA HLSLYGKIEG KNVFYWFQNH 60 KARDRQKLRK KLLGKQLQHQ QQQLMFSHHV FPPFDHQHFL HNPPHNNLLH HLHFDQPPPP 120 PLPPLPSCCA PTPPSGLGLF HQHPHVNSTP CFGAHQARAE NVVPRMTDTC TWKMDASNAK 180 YGRGNESKPL MRPMITNDQH EDWMMMMRSD NDDDDHHHHD HNDECSTRRP LKTLELFPIK 240 DKTSLKEDTS FV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021716042.1 | 1e-92 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A0K9R264 | 1e-86 | A0A0K9R264_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686181.1 | 1e-150 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-38 | WOX family protein |