PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_173700_gthp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 679aa    MW: 75591.7 Da    PI: 8.1895
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_173700_gthp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07579628147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Bv7_173700_gthp.t1 579 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 628
                         678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.49E-5388475IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.801574633IPR017930Myb domain
SMARTSM007171.5E-7578631IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-11579629IPR009057Homeodomain-like
SuperFamilySSF466894.84E-16580661IPR009057Homeodomain-like
CDDcd116603.37E-17580630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MLQKRLDYGF SGYQVPFVPR AARSRRRGRI QEKAVDNQLC AFDLLAAVAG KLLEGECSQN  60
TSTEKDQTCN IQDVVMEEQD EVNLLLKAEH CDEGSIEIAT LNLDLGLQTQ DKDCYVKETL  120
GPQNDPPSPP ASVITSSHHT DKDDSLVKMD MNDDKSDFCS HFRNSEVAHG HRDSCIPKVN  180
ESSELYDGKG AILSGNELDM HSSEDPEYFN RKAPTVASSD CSIKLSLGTD HFPCASLSPF  240
RNNNVNVVSR DDDENSSECT QPSALKVARF PTRIGDRRIR KLLASKYRRA AIKAKDGDHS  300
DTELRCIHRS RRTGYKRQRS RRIYPFKKRK FYHYSSLSNS DGSTGCKGVY SSPVRAIGQT  360
VSAFSAVRHR VNGSSSSVAG QSTTFATRES HVKLRIKSFR VPELFIDLPE TATIGSLKRT  420
VLEAVTALLG GELRVGVRLQ GKKIRDDNRT LLQSGICHDD KVESLGFTLE PNPSHVSAPV  480
SSEDDSLMFS TDVPQPLSRC PTTSANHEGA SHDHLVTNMG NLVESDHDSA PSPAEFTEEK  540
GVIDSRALVA LPEGTPQALS VVPAHQRSKR SEMAQRRIRR PFSVSEVEAL VQAVEKLGTG  600
RWRDVKLRAF DNVKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLSAHSYWS  660
QQQAKQQLKQ QSSDSCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-575636691107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281DRRIRKL
2315320KRQRSR
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089324e-38AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685737.10.0PREDICTED: telomere repeat-binding protein 2
SwissprotQ6R0E31e-130TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0K9S2D70.0A0A0K9S2D7_SPIOL; Uncharacterized protein
STRINGXP_010685737.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-115TRF-like 2