PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_167370_hxew.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 799aa    MW: 87318.7 Da    PI: 5.1188
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_167370_hxew.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91e-19658755296
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  ++
  Bv7_167370_hxew.t1 658 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGIPIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SD 745
                         79*************************999999999*****7778*******99777777777777.********************..56 PP

                         .SEE..EEEE CS
                  B3  88 .sefelvvkv 96 
                          ++++++++ 
  Bv7_167370_hxew.t1 746 vKCGKYMIRG 755
                         6999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-28652764IPR015300DNA-binding pseudobarrel domain
CDDcd100155.48E-36655756No hitNo description
SuperFamilySSF1019367.46E-23656752IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771657759IPR003340B3 DNA binding domain
SMARTSM010191.0E-20657759IPR003340B3 DNA binding domain
PfamPF023626.6E-16658754IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MNEGMKNLEL HGEDLQEFGV FHTPQEGMKD EEEIWFETAS LQQENIDNSV KNNNEINTDN  60
EFLDVDVSDP CSLFCADFPA LPDFPCMSSS SSSSSTPVGT TKPFGACSTA TSSSASTASS  120
GAASWAVLKS DADHDPSSST AVSVDIVAPP PMDHRREVSQ EGVGMVLDDV DQCMDIMQNF  180
GCIDLLENTD ICWDPSPLFE ENGDGDERED NHYRFLQSAE VIENKIVDDD DDDRVFEKFM  240
QQQQQQCGGS ITTSHTTSGG VVDVVFGQSS GGGEDGGVNF GSGSSPDDLA MVFFEWLKSN  300
KEMISAADLR NIKIKKSTIE NAAKRLGGGK EGMKQLLKLI LQWVQNHHLQ NKRMTTAVED  360
EIQVASVNNS HNPSYSIQEH ANNENNNNKN STTPSEPSGN PSGQTEQQCF SPTTWLQPTP  420
APSSFVSDSA PMVSLPAPPP PAGFGPGVGY MGGDLYSGGT PMASYPPPMP PSDYHHSWGP  480
TPMQYGLGPH YGSFGDATQF GGYGNPPAYP GFYYHPGPAE GLVRLGSSAT KEARKKRMAR  540
QRRFFSHNHR SSHTNSQNNN NSNGVVNQQM INQMAEQHAA GIGNGNCGVA PHGNWVYWPP  600
PPPSHVPPPQ VNRSGPMVGQ MMPPQPAIER SGNGFSKQVG IEKKQGWKTE KNLRFLLQKV  660
LKQSDVGNLG RIVLPKKEAE THLPELEARD GIPIAMEDIG TSRVWNMRYR FWPNNKSRMY  720
LLENTGDFVR SNGLQEGDFI VIYSDVKCGK YMIRGVKVRS QQQSMKAETT NKKSNKTQKT  780
EGTSSPAGRL SSSPNIMQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-396537631111B3 domain-containing transcription factor FUS3
6j9b_D2e-396537631111B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684987.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLO803940.0O80394_MESCR; Transcription factor Vp1
STRINGXP_010684986.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-114B3 family protein