PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_162100_nmor.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | TCP | ||||||||
Protein Properties | Length: 195aa MW: 21083.6 Da PI: 7.6326 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.7 | 1.2e-35 | 47 | 191 | 4 | 113 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg.... 88 + ++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a + +++ ++sss + Bv7_162100_nmor.t1 47 RSNASKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRTDGQTIEWLLRHAEPSIIAATGTGTVPAvaE-FSSPAKSSSI-----Pakal 131 556789********************************************************88888321.1222222222.....13333 PP TCP 89 ...................................kaaksaakskksqksaasalnlake 113 ++++ +++ ++q+++a +l +ake Bv7_162100_nmor.t1 132 plsvdsgcyfpspavlefgyrhipsftalllqpddGQQQQLQQEDEQQQQEAGVLGFAKE 191 466777778888888899998888888888888854444444667777777777888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-30 | 50 | 180 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.381 | 51 | 105 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGSESTTTTT IFHNNNLPSS DPTFSLLSTT TATSSAAKST KLAVTRRSNA SKDRHTKVNG 60 RGRRVRMPAL CAARIFQLTR ELGHRTDGQT IEWLLRHAEP SIIAATGTGT VPAVAEFSSP 120 AKSSSIPAKA LPLSVDSGCY FPSPAVLEFG YRHIPSFTAL LLQPDDGQQQ QLQQEDEQQQ 180 QEAGVLGFAK EEIEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010684094.1 | 1e-143 | PREDICTED: transcription factor PCF1 | ||||
TrEMBL | A0A0K9QRN6 | 1e-73 | A0A0K9QRN6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010684094.1 | 1e-142 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 2e-28 | TCP family protein |