PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_160280_pcwa.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 182aa    MW: 20503.4 Da    PI: 4.3916
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_160280_pcwa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.87.4e-2491149260
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                         Fl+k+y++++d++l+ +isw + g+sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+Y
  Bv7_160280_pcwa.t1  91 FLSKTYDLVDDPTLDPIISWGSLGQSFVVWDPVEFSRIVLPRNFKHNNFSSFVRQLNTY 149
                         9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-2586149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-2287150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-1887164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-2091149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1391114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-13129141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-13142154IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MFFPTTTTTT PINSPSKIPN SSSIQSGLFD PPIISFPDPV FTSGFSSQSL NFQSISSPLN  60
YVFPENFGVV PEIDLNPHPL ECLQGTPIPP FLSKTYDLVD DPTLDPIISW GSLGQSFVVW  120
DPVEFSRIVL PRNFKHNNFS SFVRQLNTYV GTFLFFFFCC ILLLSPFFYT CIIWVGRAHE  180
VD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A7e-1785149165HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A7e-1785149165HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683876.11e-100PREDICTED: heat stress transcription factor A-3 isoform X3
TrEMBLA0A0K9QJU91e-46A0A0K9QJU9_SPIOL; Uncharacterized protein
STRINGXP_010683874.15e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-38heat shock transcription factor A3