PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_159010_tzwj.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 282aa MW: 32953.6 Da PI: 5.654

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_159010_tzwj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.6	6.8e-42	9	142	2	126
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ppGfrF Pt+eel+++yL++k++g + ++++vi++v iy+++PwdLpk + + + +ew+fF+++++++ +g r+nr t++gyWkat Bv7_159010_tzwj.t1 9 PPGFRFYPTEEELISFYLHQKLQGGRQDIDRVIPSVYIYDYNPWDLPKlsgeecRSDPQLQEWFFFIPKQEREVNGGRPNRLTTTGYWKAT 99 8**************************99************65666433333556************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmhey 126 g+ ++s+ +++ +g+k+t+vfy+g r+++g+kt+W m+ey Bv7_159010_tzwj.t1 100 GSPGYIYSSfDNKPIGVKRTMVFYRGraRSRSGTKTEWKMNEY 142 ****999999******8733678899******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-45	6	171	IPR003441	NAC domain
PROSITE profile	PS51005	46.873	8	171	IPR003441	NAC domain
Pfam	PF02365	4.0E-22	9	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MADDEILQPP GFRFYPTEEE LISFYLHQKL QGGRQDIDRV IPSVYIYDYN PWDLPKLSGE 60 ECRSDPQLQE WFFFIPKQER EVNGGRPNRL TTTGYWKATG SPGYIYSSFD NKPIGVKRTM 120 VFYRGRARSR SGTKTEWKMN EYMPVEDHPS SLTNPAPSLN GDFTVCRVYI KSKCLRAFDR 180 RPAPQPINRP SLLGHHHEVD LRQPSSSNQH HLNQAQQPPR VEIRRCRSSE SFSSLEDNQV 240 INNNNDPNQA ANDEQDNNLD MEIEPQGPLW EWDDSWINWY MI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	9	171	18	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	9	171	18	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	9	171	18	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	9	171	18	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	9	171	21	168	NAC domain-containing protein 19
3swm_B	2e-30	9	171	21	168	NAC domain-containing protein 19
3swm_C	2e-30	9	171	21	168	NAC domain-containing protein 19
3swm_D	2e-30	9	171	21	168	NAC domain-containing protein 19
3swp_A	2e-30	9	171	21	168	NAC domain-containing protein 19
3swp_B	2e-30	9	171	21	168	NAC domain-containing protein 19
3swp_C	2e-30	9	171	21	168	NAC domain-containing protein 19
3swp_D	2e-30	9	171	21	168	NAC domain-containing protein 19
4dul_A	1e-30	9	171	18	165	NAC domain-containing protein 19
4dul_B	1e-30	9	171	18	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683676.1	0.0	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-58	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0K9R252	1e-129	A0A0K9R252_SPIOL; Uncharacterized protein
STRING	XP_010683676.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-60	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]