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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Bv7_158010_kchi.t1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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| Family | WRKY | ||||||||
| Protein Properties | Length: 528aa MW: 58915.1 Da PI: 6.0403 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 95.5 | 3.6e-30 | 214 | 271 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+Dgy+WrKYGqK+vkgs++prsYY+C+++gCp+kkkvers ++ v+ei+Y+g+Hnh+k
Bv7_158010_kchi.t1 214 EDGYCWRKYGQKQVKGSTNPRSYYKCSYQGCPTKKKVERSP-EGYVTEIVYKGSHNHPK 271
8****************************************.***************85 PP
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| 2 | WRKY | 106.3 | 1.5e-33 | 380 | 438 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k++er+++d+++v++tYeg+Hnh+
Bv7_158010_kchi.t1 380 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHIERASHDTRAVITTYEGKHNHD 438
59********************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 4.7E-26 | 202 | 272 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 23.663 | 208 | 272 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 1.83E-23 | 210 | 272 | IPR003657 | WRKY domain |
| SMART | SM00774 | 5.5E-32 | 213 | 271 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 2.2E-23 | 214 | 270 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 2.3E-37 | 365 | 440 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 3.79E-29 | 372 | 440 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 38.825 | 375 | 440 | IPR003657 | WRKY domain |
| SMART | SM00774 | 9.6E-39 | 380 | 439 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.3E-25 | 381 | 438 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009409 | Biological Process | response to cold | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0009651 | Biological Process | response to salt stress | ||||
| GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
| GO:0010200 | Biological Process | response to chitin | ||||
| GO:0010508 | Biological Process | positive regulation of autophagy | ||||
| GO:0042742 | Biological Process | defense response to bacterium | ||||
| GO:0050832 | Biological Process | defense response to fungus | ||||
| GO:0070370 | Biological Process | cellular heat acclimation | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 528 aa Download sequence Send to blast |
MNSSSSFTDF FANTNDDVLE NDYGNNNKEK NNNLINNGGD DHSSNSNNWS GFDQLIEVPK 60 FKSMAPSSLS VSENTTTLVS PPSFLTTPNA FSPSIFLDSP LLNNFPSPTV GAFGGQSFNW 120 GSSNETQLGA KEEGRNNNFT FHAPNTSRED WNLDELKKQN EMINKEQITS NSEFSANQII 180 SQEMNTTQTD TAANLHRNYN SQPVHMNRAQ KRAEDGYCWR KYGQKQVKGS TNPRSYYKCS 240 YQGCPTKKKV ERSPEGYVTE IVYKGSHNHP KPQPGRRPSV QINNNNNNGY DGSEASNASL 300 LQVQNEYSSF TPETSSVSLE DDDEFDQSSA MSKSGKDDEN EPEPKRWKGE NEGEVISGYG 360 SRTVKEPRVI VQTTSEIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSAG CPVRKHIERA 420 SHDTRAVITT YEGKHNHDVP AARGSGSYNN APMPVRPSAI TSQPNQLIGL RTLNNNNITS 480 VSRTESQQPP FSLQMLQNNA SFGFSGFGNS SEAKEEPIDN MFFDSFLR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wj2_A | 9e-35 | 214 | 441 | 8 | 78 | Probable WRKY transcription factor 4 |
| 2lex_A | 9e-35 | 214 | 441 | 8 | 78 | Probable WRKY transcription factor 4 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21336597, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940, ECO:0000269|PubMed:22392279}. | |||||
| Binding Motif ? help Back to Top | |||
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| Motif ID | Method | Source | Motif file |
| MP00299 | DAP | Transfer from AT2G38470 | Download |
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| Regulation -- Description ? help Back to Top | ||||||
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| Source | Description | |||||
| UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by infection with the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21498677, PubMed:21990940). Induced by infection with the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:17059405). {ECO:0000269|PubMed:17059405, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019106270.1 | 0.0 | PREDICTED: probable WRKY transcription factor 33 | ||||
| Swissprot | Q8S8P5 | 1e-116 | WRK33_ARATH; Probable WRKY transcription factor 33 | ||||
| TrEMBL | A0A0K9Q8X6 | 0.0 | A0A0K9Q8X6_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010683807.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38470.1 | 1e-114 | WRKY DNA-binding protein 33 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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