PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_151910_mapy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 465aa    MW: 51679.7 Da    PI: 8.0389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_151910_mapy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33186242360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers  d++++ei+Y+geHnh+k
  Bv6_151910_mapy.t1 186 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSL-DGQITEIVYKGEHNHPK 242
                         9***************************************.***************85 PP
2WRKY102.81.9e-32392449259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+vkg+ +prsYYrCt  +C+v+k+ver+ +dp+++++tYeg+Hnhe
  Bv6_151910_mapy.t1 392 GDGFRWRKYGQKVVKGNSYPRSYYRCTNLKCNVRKHVERALDDPTTFITTYEGRHNHE 449
                         6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-30175243IPR003657WRKY domain
PROSITE profilePS5081124.157179243IPR003657WRKY domain
SuperFamilySSF1182902.35E-26182243IPR003657WRKY domain
SMARTSM007741.8E-37184242IPR003657WRKY domain
PfamPF031061.7E-25186241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-32377451IPR003657WRKY domain
SuperFamilySSF1182905.89E-28386451IPR003657WRKY domain
PROSITE profilePS5081132.11386451IPR003657WRKY domain
SMARTSM007742.3E-37391450IPR003657WRKY domain
PfamPF031062.0E-25393449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEVKEMDRVV ITKPIASRPN STDFRMFSEL LASPTPADTS SKMAVPAIRP KTVRVKSSIS  60
QAPLAKSFQA GASGAAPYSS SDNMSRAQNQ STIYRPLAKV VSKATVSLLA NMQGNSDIAH  120
QQALSQADVS AQQDKHWLFS NQHPSNLSMV ELSQSIEPPT ISQQMLDGEP TMLTSSTASA  180
DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCLVKKK VERSLDGQIT EIVYKGEHNH  240
PKPDHAKRSS SLSGVQELEL PTAGPDQDLN SNAHKLCDDI CDNNVGFERQ MEIQNADPFS  300
KKSMLTEEFA LSCNDHIESE KHNADDMIIE VSAGLGGGCE ESVKGLKVHD DDGTKRKRRK  360
QENQNNAAGK SSKGVHEPQI SVHNNTEPEI MGDGFRWRKY GQKVVKGNSY PRSYYRCTNL  420
KCNVRKHVER ALDDPTTFIT TYEGRHNHEM PVKMMNNSSA AEPET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28186451777Probable WRKY transcription factor 4
2lex_A1e-28186451777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682970.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_010682971.10.0PREDICTED: WRKY transcription factor 44
TrEMBLA0A0K9RBL00.0A0A0K9RBL0_SPIOL; Uncharacterized protein
STRINGXP_010682970.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-92WRKY family protein