PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv6_150530_jqqr.t2 | ||||||||
Common Name | FL1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24390.8 Da PI: 8.8176 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.4 | 1.6e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie+ks rqvtfskRr g++KKA ELS+LCd++vav++fs++g+lye+ Bv6_150530_jqqr.t2 9 KRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFV 58 79**********************************************96 PP | |||||||
2 | K-box | 49.4 | 1.9e-17 | 97 | 176 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 a ++ e ++ R l G +Le+L l++ ++Le+qL ++l + R++K++l+le+i +l ++ek l++en++L+ +++ Bv6_150530_jqqr.t2 97 SCAEVQTCGELVKSVERYLEGPELENLRLEDFMRLERQLADALVQTRTRKTQLMLESIGTLSEQEKLLKQENEQLKDEVA 176 445555555666677799*********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.06E-29 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.936 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.59E-36 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.266 | 91 | 184 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.9E-13 | 106 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRRKIEMKR IEDKSSRQVT FSKRRSGLIK KARELSILCD VDVAVLVFSN RGRLYEFVNS 60 SSSSSLSQIL KRYQDSTAAD GKASIAAVET EQSSPSSCAE VQTCGELVKS VERYLEGPEL 120 ENLRLEDFMR LERQLADALV QTRTRKTQLM LESIGTLSEQ EKLLKQENEQ LKDEVANLIG 180 IPKSRNHKDL GVNNLMEVDA DRQYSQPLRT LPLLR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 75 | 1 | 71 | MEF2C |
5f28_B | 2e-17 | 1 | 75 | 1 | 71 | MEF2C |
5f28_C | 2e-17 | 1 | 75 | 1 | 71 | MEF2C |
5f28_D | 2e-17 | 1 | 75 | 1 | 71 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ189210 | 0.0 | DQ189210.1 Beta vulgaris FLC-like 1 splice variant 1 (FL1) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682731.1 | 1e-154 | PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1 | ||||
TrEMBL | A2CHJ4 | 1e-153 | A2CHJ4_BETVU; FLC-like 1 splice variant 1 | ||||
TrEMBL | A2T9D0 | 1e-153 | A2T9D0_BETVU; FLC-like 1 splice variant 1 | ||||
STRING | XP_010682731.1 | 1e-154 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26310.1 | 2e-34 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|