PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_150370_whxc.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | TCP | ||||||||
Protein Properties | Length: 210aa MW: 22706.8 Da PI: 4.8621 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 77.4 | 3.9e-24 | 1 | 85 | 24 | 89 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...................k 89 ++a+caar+F+L++eLG+++d++ti+WLlqq+++ai++ tg+++ +as+ +++ss+s++s +++ Bv6_150370_whxc.t1 1 MPALCAARIFQLTRELGHKSDGETIQWLLQQSEQAIIATTGSGTMPASFLsSSVSSVSEQS-TTISsgisgisggfslinanlgrT 85 9**********************************************88844444444433.222234445555555555555540 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 19.986 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.8E-20 | 1 | 137 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MPALCAARIF QLTRELGHKS DGETIQWLLQ QSEQAIIATT GSGTMPASFL SSSVSSVSEQ 60 STTISSGISG ISGGFSLINA NLGRTHFQSG SWPYGSSSVH DSGFSIRDNL DSRNKLGVQG 120 LGMSNLNMGL VNFGQQQQQQ QQQGRDSLEL GLSQDNVGFG VFNYGTINQM YQQLRQNNNN 180 NNNREEVDFG NDQQQKFLDD GIGGASQTSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682712.1 | 1e-149 | PREDICTED: transcription factor TCP20-like | ||||
TrEMBL | A0A0K9S1K9 | 1e-91 | A0A0K9S1K9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010682712.1 | 1e-148 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-23 | TCP family protein |