PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_147180_trfu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 675aa    MW: 77496.4 Da    PI: 8.4925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_147180_trfu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09468507345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE ell++  +++G++ Wkt ++++g  + + ++k+ w+
  Bv6_147180_trfu.t1 468 KWTPEEIELLKKFYEKHGPD-WKTLSNELG--KHRFHVKDTWR 507
                         8*****************88.********9..66777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1392463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-4395481IPR009057Homeodomain-like
SMARTSM007170.0032465512IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-10467527IPR009057Homeodomain-like
PROSITE profilePS500906.76468510IPR017877Myb-like domain
CDDcd001678.95E-4468497No hitNo description
PfamPF139211.5E-11469527No hitNo description
Gene3DG3DSA:1.10.10.601.3E-9482519IPR009057Homeodomain-like
PROSITE profilePS500907.898511579IPR017877Myb-like domain
SMARTSM007171.5515581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-7520580IPR009057Homeodomain-like
SuperFamilySSF466893.09E-5559637IPR009057Homeodomain-like
PROSITE profilePS500907.259581634IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MPNDDSLVEN QTYHEVTEEA QPEKTKKKQK NVEENLGVFS LSNEVLEVHE VGDGEDSRLR  60
GDNSNQQVKK KNKSEKCKEV VENAQPVKDK KREKKGDVGA GDSGRNRDRG SKKRKEKSFG  120
CNTEEDINAG VLENSKKNGT AEHTDNSNHN KTLKDKKRKK KDDVGAGDSG KNRDRGSKKM  180
KEKSLGCNTE EDINAGVLEN SKKNGTAEPT DNSNHNKKLK DKKRKKDDVG AGDSGKIRDR  240
GSKKRKEKSL GCNTEEDINA GVLENSKKNE TAEPTDNSNH NKKLKDKKRK KKDDVGAGDS  300
GKNRDRGSKK RKEKSLGCNT EEDINAGVLE NSKKDETAEP TDNSNCNKKS KKVKFSDNVE  360
VFPITDTPSK GKKKKLDDGS KEKDDLEDGV IHGKRFSKED DDIIQDAVYK YIEDHRLGEQ  420
GLEMILNCKS HPEVRHCWKE IAEALPWRHY RAVYWRAHVL FERSEARKWT PEEIELLKKF  480
YEKHGPDWKT LSNELGKHRF HVKDTWRRIR YPNLKKGRWT QEEYQNLFNL VNLDLSMKVF  540
EEKKTKHGML RDNICWEAVG EKLSTRTNSV CCTKWYDQLT SPMVSEGEWA NSDDYRLLIA  600
LVDLDATCEE DVDWDYLLEH RSGDVCRKRW NEMVRHIGEN GVKPFSEQVE ILSQRYCPDI  660
LEAREIYDNK VPVDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157180RKKKDDVGAGDSGKNRDRGSKKMK
2281291KKLKDKKRKKK
3286290KKRKK
4289311KKKDDVGAGDSGKNRDRGSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682330.10.0PREDICTED: DNA-binding protein REB1-like isoform X1
RefseqXP_010682331.10.0PREDICTED: DNA-binding protein REB1-like isoform X1
TrEMBLA0A0K9RAV40.0A0A0K9RAV4_SPIOL; Uncharacterized protein
STRINGXP_010682330.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-123MYB_related family protein