PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_139410_ykkt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 395aa    MW: 45274.5 Da    PI: 9.8227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_139410_ykkt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.5e-1529119298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgr.sef 90 
                         f++l  + ++ ++ l+lp kf+ ++++  + +  ++l+ ++   W v+l  +  s+++++t +GWkeFvka  L+ +D ++Fk+d+  ++f
  Bv6_139410_ykkt.t1  29 FQIL--PTYFHHH-LTLPTKFT-ANEIA-KLPEVVILKGPNEIIWHVNL-LKTDSNHVMITgDGWKEFVKAYSLQKKDLIIFKYDRAsKCF 113
                         5555..5556666.*******9.66544.47779***************.4555555555449**********************988999 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                            v +f+
  Bv6_139410_ykkt.t1 114 --EVLIFD 119
                         ..888776 PP
2B340.35.6e-13286383198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                         f+ ++ ps+v k+  lv+p++   e+ + ++  ++++    + ++W v ++ +++ g+  +++GWk+F+ +n L+e D+++F    ++ ++
  Bv6_139410_ykkt.t1 286 FIVIMRPSHVYKRFSLVIPRRWKVENFSRNTF-QEVI-LRIQDKTWVVSFCATNNHGHGGFEGGWKKFALDNFLEEFDVCLFVPGgQEnKS 374
                         78899*****************8888544333.3444.55688*********99999999***********************65344588 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                         f l v +fr
  Bv6_139410_ykkt.t1 375 FVLDVNIFR 383
                         888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.71725121IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-1826120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1627120IPR015300DNA-binding pseudobarrel domain
CDDcd100173.35E-2027119No hitNo description
SMARTSM010192.3E-1328121IPR003340B3 DNA binding domain
PfamPF023621.0E-1231119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-16280383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-15283371IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-17285383No hitNo description
PfamPF023621.2E-11286383IPR003340B3 DNA binding domain
SMARTSM010191.2E-8286385IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546286385IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEEQKKNSGT CRSWEEETYW KHFHFVHFFQ ILPTYFHHHL TLPTKFTANE IAKLPEVVIL  60
KGPNEIIWHV NLLKTDSNHV MITGDGWKEF VKAYSLQKKD LIIFKYDRAS KCFEVLIFDP  120
ASSCEREASY FVRQHKQTQT GGFDGQAKST SYEYVICSSD STANTDEDRE SGKDKSKQQK  180
AEKVNVRTQK GVSTSVGAST IIREVPSNYA TKRKAINAHG NPSIKARICS AARGRNRNKE  240
VPLKKQSETR KSYKGPCYIS NRRPVTESEK SKAFAMACKS ATNESFIVIM RPSHVYKRFS  300
LVIPRRWKVE NFSRNTFQEV ILRIQDKTWV VSFCATNNHG HGGFEGGWKK FALDNFLEEF  360
DVCLFVPGGQ ENKSFVLDVN IFRVVNELTP LSPVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681098.10.0PREDICTED: B3 domain-containing protein REM16
STRINGXP_010681098.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-53B3 family protein