PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_138460_dszg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 350aa    MW: 40700.9 Da    PI: 5.993
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_138460_dszg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.9e-2227116199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk++     ++s  l++p+kf++e   k   s ++tl+ +sg+ W+ +l   ++++ yvl++GW++Fvk++ L+egDf+vF+++++s f 
  Bv6_138460_dszg.t1  27 FFKIM--LGEFRSF-LRIPRKFIAESRVK--LSEKVTLRGPSGNIWTTYL--ARRGEDYVLENGWQDFVKDHSLNEGDFLVFRHVEDSMF- 109
                         56666..6666666.9*******999655..7789***************..*******************************9988888. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v +f++
  Bv6_138460_dszg.t1 110 -NVLIFDT 116
                         .9999986 PP
2B354.22.6e-17238319893
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                          +v+ + +l++p++fa+++   +++s+ ++l+   +++W+v+l  +++  +++lt+GW +Fv +n+L++ D++v++l++  ++++++
  Bv6_138460_dszg.t1 238 THVHHLFILTIPREFADNCL--PRKSQVIRLRV-GSKTWRVRL--NRRNAQCTLTGGWAQFVFENNLETEDMCVLELVDAgTSQRPT 319
                         67888899********8885..34566777665.88*******..999999*************************99766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2720119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-2821119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.32624117IPR003340B3 DNA binding domain
CDDcd100171.10E-2225115No hitNo description
PfamPF023623.3E-1927116IPR003340B3 DNA binding domain
SMARTSM010194.6E-2127117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20227328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-19229327IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-18229327No hitNo description
PROSITE profilePS5086311.998231329IPR003340B3 DNA binding domain
SMARTSM010198.3E-9231329IPR003340B3 DNA binding domain
PfamPF023621.4E-14237319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVDVCVQCKA WRKQQYWDAS SGNKHHFFKI MLGEFRSFLR IPRKFIAESR VKLSEKVTLR  60
GPSGNIWTTY LARRGEDYVL ENGWQDFVKD HSLNEGDFLV FRHVEDSMFN VLIFDTTGCE  120
REGSYFIEGS GQLCADSCCA MRNNTNPQTH TTFKSADEGK EKLDEEGLVE EEEEEEEEEE  180
EEESGGEQNE PDNQGTRYLK YYESSRREIT KKDMERAFHL ASKHLTKQPS CKIRMKMTHV  240
HHLFILTIPR EFADNCLPRK SQVIRLRVGS KTWRVRLNRR NAQCTLTGGW AQFVFENNLE  300
TEDMCVLELV DAGTSQRPTI LDVHIFRAVE EIVPLKVVKS FQSPMNSQMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680983.10.0PREDICTED: B3 domain-containing protein Os01g0723500
RefseqXP_010680985.10.0PREDICTED: B3 domain-containing protein Os01g0723500
RefseqXP_019105783.10.0PREDICTED: B3 domain-containing protein Os01g0723500
STRINGXP_010680983.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-31B3 family protein