PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_136850_qpam.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 320aa    MW: 34796.1 Da    PI: 7.5234
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_136850_qpam.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.8e-33153210259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Bv6_136850_qpam.t1 153 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCSVKKRVERSSEDPSIVITTYEGQHCHH 210
                         8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-34137211IPR003657WRKY domain
SuperFamilySSF1182902.09E-28144210IPR003657WRKY domain
PROSITE profilePS5081129.769147212IPR003657WRKY domain
SMARTSM007741.2E-38152211IPR003657WRKY domain
PfamPF031063.7E-26153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDSNSNKPDH PTDSTWSLSL PTSDSDNVFF FNRDSHNNNN HLLSDFPWSY NSSHVDDYKP  60
SDAPITTTTT TATTAAATAS SSASQPLLAD QSSDVTPANP SVSSSSSEDL GKSAVTPAAA  120
LTDTSTKVKK KGQKRIRQPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP FPRSYYRCTN  180
SKCSVKKRVE RSSEDPSIVI TTYEGQHCHH TIGFPRSSGF LSHEGAFLGQ FAPPMSSHSS  240
LVYPGMHFSQ ENSVNSSIAQ AAAAASVSTV HQTHHHHQQT PSNTRDSPLV VSQVTQDQMP  300
PLSSGEGLLG DIVPPGMRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26142209774Probable WRKY transcription factor 4
2lex_A1e-26142209774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680728.10.0PREDICTED: probable WRKY transcription factor 57
RefseqXP_019105751.10.0PREDICTED: probable WRKY transcription factor 57
TrEMBLA0A0K9R0R91e-120A0A0K9R0R9_SPIOL; Uncharacterized protein
STRINGXP_010680728.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-62WRKY DNA-binding protein 57