PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_136840_kdwc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 534aa    MW: 59773.1 Da    PI: 9.2869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_136840_kdwc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012383405123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C  C+k+F+++  L  Hi +H
  Bv6_136840_kdwc.t1 383 YECCVCNKTFKTHQALGGHIISH 405
                         99*****************9998 PP
2zf-C2H215.64.5e-05457479123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kCp+C+k+F++   L  H r+H
  Bv6_136840_kdwc.t1 457 HKCPYCPKVFKSGQALGGHKRSH 479
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0211226IPR007087Zinc finger, C2H2
SMARTSM003550.0996789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0766794IPR007087Zinc finger, C2H2
PfamPF139124.8E-66891IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494383410IPR007087Zinc finger, C2H2
SMARTSM003550.039383405IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.61E-9383405No hitNo description
PfamPF139123.1E-7383407IPR007087Zinc finger, C2H2
PROSITE patternPS000280385405IPR007087Zinc finger, C2H2
SuperFamilySSF576675.61E-9452479No hitNo description
PROSITE profilePS501579.536457479IPR007087Zinc finger, C2H2
SMARTSM003550.0062457479IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-11457480IPR007087Zinc finger, C2H2
PROSITE patternPS000280459479IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEEKKDQEEF KHVCKLCNKR YPSGKNSGYG LRENPKKTWR LVNSKLVNNT GKQQPPHDFQ  60
QQQQQERVCK QCGKGFHSLK ALCGHMSSHS EKERHFKEED DNSWSSDSKD QLILAMESHS  120
DNNNSNNNSN NNNNINNNHL KRQTRSSLLR YKSLTTVDSQ SPPPPGGGGF SSYGCGGGGG  180
GGSSSNHSEI DQHEQEEVAI CLMMLSRDSS GHNKSCFNFT AESSDNNSVI LEGGSSSNHV  240
GIGRKRKDFC LNNNTNKKKI KQVVVVAQQQ IDNVVNHQEI DNSDSGYFEN GAKELESDDS  300
VDGFVRNYGF KKPKSEFGSK IIAESFYDYD NDSRKRRNKQ QVSNLRDDSP ESDENSSKKM  360
KMMKQDYYRF SNNNNNNKKG SKYECCVCNK TFKTHQALGG HIISHRKNGE NSLDTSIISG  420
KQQQQQQQIE NNCNPKKLAA STTKNMGNTK SKKVKGHKCP YCPKVFKSGQ ALGGHKRSHM  480
IGSNAGVLKL QAAKSRIERV PLPEHEPKQP PLIDLNLPAP MEEEGSGNSQ FVAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680727.10.0PREDICTED: probable serine/threonine-protein kinase clkA
TrEMBLA0A0K9QEW21e-113A0A0K9QEW2_SPIOL; Uncharacterized protein
STRINGXP_010680727.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-45C2H2-like zinc finger protein