PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_136600_detz.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 282aa MW: 32110.8 Da PI: 8.7806

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_136600_detz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.1	2.7e-26	71	164	34	128
NAM 34 ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvm 123 +++v+++ v P L+ +++k wyfF++rdk++++g+r++r +k+gyWkat +k++++++++++g k+tLv+y g +a++g+kt+W+m Bv6_136600_detz.t1 71 VDSVNLNVVVPT-LN-YEPQGDKIWYFFTPRDKRHKNGSRPSRRAKDGYWKATRAEKTIKTNDDQEIGFKNTLVYYIGkNASDGVKTNWIM 159 445555555553.43.23457899**************************************************7758899**** PP NAM 124 heyrl 128 he+r+ Bv6_136600_detz.t1 160 HEFRI 164 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.077	41	192	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-28	85	191	IPR003441	NAC domain
Pfam	PF02365	8.9E-15	86	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MTASSDLERW WGSLRLSLRF VVGAVSLRCR CGSWFVRCKC LSLSWEKGGG RQKERGGQKV 60 REVRETALIG VDSVNLNVVV PTLNYEPQGD KIWYFFTPRD KRHKNGSRPS RRAKDGYWKA 120 TRAEKTIKTN DDQEIGFKNT LVYYIGKNAS DGVKTNWIMH EFRINGPSRL GPSLKGKRDM 180 LLDYVLCRIH QNDESGKRSP KKQKTEPVEL DEEGNNSSAE EERNNSNENT NDNADADADT 240 DIANTNTNSN TNINTNTKID IDLNQPPKDN MTGHVEHNMC WL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	89	198	69	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	89	198	69	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	89	198	69	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	89	198	69	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-29	89	198	72	174	NAC domain-containing protein 19
3swm_B	2e-29	89	198	72	174	NAC domain-containing protein 19
3swm_C	2e-29	89	198	72	174	NAC domain-containing protein 19
3swm_D	2e-29	89	198	72	174	NAC domain-containing protein 19
3swp_A	2e-29	89	198	72	174	NAC domain-containing protein 19
3swp_B	2e-29	89	198	72	174	NAC domain-containing protein 19
3swp_C	2e-29	89	198	72	174	NAC domain-containing protein 19
3swp_D	2e-29	89	198	72	174	NAC domain-containing protein 19
4dul_A	2e-29	89	198	69	171	NAC domain-containing protein 19
4dul_B	2e-29	89	198	69	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680861.1	1e-147	PREDICTED: NAC domain-containing protein 19-like
STRING	XP_010680861.1	1e-146	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	5e-30	NAC domain containing protein 19