PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_128820_ufoz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 259aa    MW: 28394.8 Da    PI: 7.7382
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_128820_ufoz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20140174135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Bv6_128820_ufoz.t1 140 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 174
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-18134191IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-17138174IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.04E-13138175No hitNo description
PROSITE profilePS5011413.784138170IPR000679Zinc finger, GATA-type
CDDcd002025.06E-13139171No hitNo description
PfamPF003206.0E-18140174IPR000679Zinc finger, GATA-type
PROSITE patternPS003440140165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVGPCSSCGP YNQYCGHHSA AAYWPTTQPQ QYPHNYHNSV SYDDDEVDYM YSSSSSSSSY  60
SSVDCTLSLG TPSTRLTNDN NTTTNNSNKP TPTHRNSVSS FCWDLLHPNK QSSSSTPKPS  120
RSNNHPAANS GGDPLFVRRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK KEERRAAAAT  180
TTATANNGAG SGMMDPHHGY YNGSWAHQYT PAAPQKMQCY GTPSEFRFIE DDRGSDGGIQ  240
FLSWLTHDRP SGLVHDFTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679730.10.0PREDICTED: GATA transcription factor 19
TrEMBLA0A0K9S0Y41e-115A0A0K9S0Y4_SPIOL; Uncharacterized protein
STRINGXP_010679730.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-33GATA family protein