PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_128680_pjam.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 611aa    MW: 67518.7 Da    PI: 4.7932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_128680_pjam.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.27.3e-1112456101373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+++LlecA+ ++++d e+a + + rl++ +s++gdp+qRla+yfteAL+ rl+     l++++++++     s+e + ++k++++++P+ 
  Bv6_128680_pjam.t1 245 LITALLECAR-LAESDPERAVKSVVRLRDSVSQHGDPTQRLAFYFTEALSCRLSP---PLSSTIETTA-----SEECTLSYKALNDACPFS 326
                         5789******.56669999999********************************9...5555555544.....4588899*********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                         kf+hltaNqaIlea+eg+e++Hi+Df+i qG+QW+aLlqaLa+Rp g+p ++Ri g+ +p+ g   +++l +tg+rL++fA+ l+++fef+
  Bv6_128680_pjam.t1 327 KFAHLTANQAILEATEGAEKIHIVDFGIVQGVQWAALLQALATRPTGKPiKIRISGIPAPALGesPTTALFATGNRLRDFAKVLELNFEFE 417
                         *********************************************88887**********99998999*********************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         + + + +++l+ +++rv+++E+laVn++lql++llde+    +   + Lkl ksl+Pk+v++ e e+ +n+  +l+rf  a++yysa+fds
  Bv6_128680_pjam.t1 418 P-ILTPVHELTQSSFRVDSEEVLAVNFMLQLYNLLDETNVEVE---AALKLAKSLNPKIVTLGEYEVGLNRVGYLTRFKTAVNYYSAVFDS 504
                         *.799******************************77766655...9******************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                         l+ +l res +r+ vEr ++gr+i+ +v  e    rrer++ +e+W+ ++e+aGF+pv+ls++a++qak ll +++ s  y++ ++   ++
  Bv6_128680_pjam.t1 505 LDPNLDRESMDRVQVERLIFGRRIMGCVGPELPGtRRERMQCKEEWKGMMENAGFEPVTLSNYANSQAKILLWNYNySSSYKLVDSPPGFL 595
                         *******************************8766*****************************************9999**998876666 PP

                GRAS 360 .lgWkdrpLvsvSaW 373
                          l W++ pL++vS+W
  Bv6_128680_pjam.t1 596 sLSWNGVPLLTVSSW 610
                         6************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.05219589IPR005202Transcription factor GRAS
PfamPF035142.5E-108245610IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QQQQQQQQEQ QQQNHHHQAP FLGPNSPFFL SPWPTSVPPM  60
STSPPPPLGF HDPFQVGGPT SESAEPWQLD HHHSTAFRFA DFSGVSTAEF DSDEWMESLM  120
TAGTGNGNNG TNTGVAPDST PSNLHSSCDA WQGTDFSLYS SDPFVTRINV SPSDLTRVIY  180
SDADKTVTTH SWVPPSPLKD PVPPQHNNPN DAVSVSVAVA VASCSSPREQ EQEREQEQEH  240
SWPPLITALL ECARLAESDP ERAVKSVVRL RDSVSQHGDP TQRLAFYFTE ALSCRLSPPL  300
SSTIETTASE ECTLSYKALN DACPFSKFAH LTANQAILEA TEGAEKIHIV DFGIVQGVQW  360
AALLQALATR PTGKPIKIRI SGIPAPALGE SPTTALFATG NRLRDFAKVL ELNFEFEPIL  420
TPVHELTQSS FRVDSEEVLA VNFMLQLYNL LDETNVEVEA ALKLAKSLNP KIVTLGEYEV  480
GLNRVGYLTR FKTAVNYYSA VFDSLDPNLD RESMDRVQVE RLIFGRRIMG CVGPELPGTR  540
RERMQCKEEW KGMMENAGFE PVTLSNYANS QAKILLWNYN YSSSYKLVDS PPGFLSLSWN  600
GVPLLTVSSW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502446113375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679714.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0K9QGY40.0A0A0K9QGY4_SPIOL; Uncharacterized protein
STRINGXP_010679714.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein