PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_128450_onnj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRF
Protein Properties Length: 581aa    MW: 62642.9 Da    PI: 8.2883
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_128450_onnj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24223266144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  Bv6_128450_onnj.t1 223 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 266
                         79***************************************998 PP
2QLQ62.21.4e-21153189137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         ++FT+aQ+ +L++Q+++yKyL an+PvP++Ll +i+k
  Bv6_128450_onnj.t1 153 GPFTPAQWIELEHQAMIYKYLTANVPVPANLLIPIRK 189
                         59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-12153189IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.5E-15154188IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.572154189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954223267IPR014977WRC domain
PfamPF088793.8E-21224266IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDFGLVGVDS LVVGQNVPPS SSSSEQQQQQ QVLEGKPKCN GSGFIKQERS DPFLDEDNRA  60
SKMVKRVEDL GVRSDNTTLP KQQMLSFSSS TKPQVSFLCA KDVGLIADKN AQNLVLSYFQ  120
QPHSSATYTR TPAGFNPGNL NGSMHGSFTG IRGPFTPAQW IELEHQAMIY KYLTANVPVP  180
ANLLIPIRKA LSSSGFPGFS IGSYPPHSYG WGAFHLGFSG STDPEPGRCR RTDGKKWRCS  240
RDAVPDQKYC ERHINRGRHR SRKPVEGHTG QAASGPTNTK VVPAMSASMS SLVSSSGGAS  300
NSVTVAHQHQ IKGLQPTGVS NASSDSIVNR YHNEPDLSVM PSTINLKTND TPFSIAKQHI  360
PLDESLQSEF GLVSTDSLLN PTQKSAYMGC KSYNSSILEF NAQQTQDQYP LRHFMDAWPK  420
DNANRSAIPW PEDMKSDWTQ LSMSIPMSAS DFSSSSPNQE KITVSPLRLS RELDQSQVGL  480
GVGTIVGETG MKQNSWIPIT WGNSMGGPLG EVLNNTSNIA PTLNLKGEGC HGSPQLGSSP  540
TGVLQKSTFV SLSNSSSAGS PRGENILGSA SHDSSTFVPS M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5504495e-43EU550449.1 Arabidopsis thaliana isolate CS6714 GRL1 (GRL1) gene, partial cds.
GenBankEU5504505e-43EU550450.1 Arabidopsis thaliana isolate CS6732 GRL1 (GRL1) gene, partial cds.
GenBankEU5504515e-43EU550451.1 Arabidopsis thaliana isolate CS6751 GRL1 (GRL1) gene, partial cds.
GenBankEU5504525e-43EU550452.1 Arabidopsis thaliana isolate CS6781 GRL1 (GRL1) gene, partial cds.
GenBankEU5504535e-43EU550453.1 Arabidopsis thaliana isolate CS6796 GRL1 (GRL1) gene, partial cds.
GenBankEU5504545e-43EU550454.1 Arabidopsis thaliana isolate CS6797 GRL1 (GRL1) gene, partial cds.
GenBankEU5504555e-43EU550455.1 Arabidopsis thaliana isolate CS6799 GRL1 (GRL1) gene, partial cds.
GenBankEU5504565e-43EU550456.1 Arabidopsis thaliana isolate CS902 GRL1 (GRL1) gene, partial cds.
GenBankEU5504575e-43EU550457.1 Arabidopsis thaliana isolate CS6810 GRL1 (GRL1) gene, partial cds.
GenBankEU5504585e-43EU550458.1 Arabidopsis thaliana isolate CS6824 GRL1 (GRL1) gene, partial cds.
GenBankEU5504595e-43EU550459.1 Arabidopsis thaliana isolate CS6885 GRL1 (GRL1) gene, partial cds.
GenBankEU5504605e-43EU550460.1 Arabidopsis thaliana isolate CS6896 GRL1 (GRL1) gene, partial cds.
GenBankEU5504615e-43EU550461.1 Arabidopsis thaliana isolate CS6922 GRL1 (GRL1) gene, partial cds.
GenBankEU5504625e-43EU550462.1 Arabidopsis thaliana isolate CS906 GRL1 (GRL1) gene, partial cds.
GenBankEU5504635e-43EU550463.1 Arabidopsis thaliana isolate CS931 GRL1 (GRL1) gene, partial cds.
GenBankEU5504645e-43EU550464.1 Arabidopsis thaliana isolate CS1602 GRL1 (GRL1) gene, partial cds.
GenBankEU5504655e-43EU550465.1 Arabidopsis thaliana isolate CS6182 GRL1 (GRL1) gene, partial cds.
GenBankEU5504665e-43EU550466.1 Arabidopsis thaliana isolate CS6603 GRL1 (GRL1) gene, partial cds.
GenBankEU5504675e-43EU550467.1 Arabidopsis thaliana isolate CS6608 GRL1 (GRL1) gene, partial cds.
GenBankEU5504685e-43EU550468.1 Arabidopsis thaliana isolate CS6626 GRL1 (GRL1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679671.10.0PREDICTED: growth-regulating factor 2
TrEMBLA0A0K9QDT80.0A0A0K9QDT8_SPIOL; Uncharacterized protein
STRINGXP_010679671.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-98growth-regulating factor 2