PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_128210_fjig.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | GRAS | ||||||||
Protein Properties | Length: 555aa MW: 63654.4 Da PI: 6.6081 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 326.7 | 4.5e-100 | 168 | 554 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lLle+A+avs++d+++ ++lL+ l+elasp+gd q+la+yft+AL +r+++s++++y+++++ ++++ + +++ ++l f+evsP+ +f Bv6_128210_fjig.t1 168 TLLLEAARAVSDSDTARLHQLLWMLNELASPYGDVEQKLASYFTQALFTRMTDSGDRCYHTMRTAADKSFSFESTRKMLLKFQEVSPWTTF 258 79************************************************************9999986554444455555********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlva 183 +h++ N a+ +a++ge+ +HiiD++ + ++QWp+Ll+a a+R +++p+l++T+v + ++ ++ ++e+g+rL+kfA+ +gvpf+f+v+++ Bv6_128210_fjig.t1 259 GHVASNGALIDALDGEHNLHIIDISNTFCTQWPTLLEAVATRMDETPHLKLTTVLDGDEPgVQRVMREIGNRLEKFARLMGVPFKFKVIHH 349 *****************************************************9886555699*************************966 PP GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.............sFlerflea 260 +l+++++++L+++++Ea+a+n+v +lh++ +++rd++ ++++l+Pkvv++ve+ead ++ +F+++f e+ Bv6_128210_fjig.t1 350 VgDLSNFDYSQLDIREDEAVAINCVNSLHSVS------QHRRDTIFAAFRRLNPKVVTIVEEEADFVGPtpthththtptsdEFVRGFEEC 434 66*****************************8......66799********************9985444788889999999********* PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 l+++ + f+sl++ ++r+s+e+ ++Er+ gr +v+++ac ++ + er+e ++kW r++ aGF v++s+++ +++++llr++k +g+++ Bv6_128210_fjig.t1 435 LRWFRVYFESLDECFGRTSNEKLMLERA-AGRGLVDLLACPESTSSERREIASKWTGRMRGAGFVHVAYSDEVCDDVRALLRRYK-EGWSM 523 ****************************.********************************************************.67665 PP GRAS 352 e...ee.....sgslvlgWkdrpLvsvSaWr 374 e+ + ++l Wkd+p+v++SaW+ Bv6_128210_fjig.t1 524 TqcsESsssssTAGIFLNWKDQPVVWASAWK 554 5455224444477788**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.974 | 140 | 527 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-97 | 168 | 554 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0045930 | Biological Process | negative regulation of mitotic cell cycle | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MDTLFRLVSF QQPHPQQQQQ QQQLSSDQSS FNNSTNSSSS SIRSSKQNHH YYQQPQLQQY 60 PQDHHHHHQD QEEECFNFFM DEEDFSSSSS HNKQHHHHHH HPQTQPYPSS YHPHHHHHHH 120 HQHQPLQYHP STSPSTTTTS TPTNTTTTTT PLPLISDPSF YSGKWANTLL LEAARAVSDS 180 DTARLHQLLW MLNELASPYG DVEQKLASYF TQALFTRMTD SGDRCYHTMR TAADKSFSFE 240 STRKMLLKFQ EVSPWTTFGH VASNGALIDA LDGEHNLHII DISNTFCTQW PTLLEAVATR 300 MDETPHLKLT TVLDGDEPGV QRVMREIGNR LEKFARLMGV PFKFKVIHHV GDLSNFDYSQ 360 LDIREDEAVA INCVNSLHSV SQHRRDTIFA AFRRLNPKVV TIVEEEADFV GPTPTHTHTH 420 TPTSDEFVRG FEECLRWFRV YFESLDECFG RTSNEKLMLE RAAGRGLVDL LACPESTSSE 480 RREIASKWTG RMRGAGFVHV AYSDEVCDDV RALLRRYKEG WSMTQCSESS SSSSTAGIFL 540 NWKDQPVVWA SAWKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 0.0 | 158 | 555 | 76 | 474 | Protein SHORT-ROOT |
5b3h_B | 0.0 | 158 | 555 | 22 | 420 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 158 | 555 | 22 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679643.1 | 0.0 | PREDICTED: protein SHORT-ROOT | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A0K9RFQ0 | 0.0 | A0A0K9RFQ0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679643.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 0.0 | GRAS family protein |