PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_126700_qfgr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TCP
Protein Properties Length: 461aa    MW: 48721.7 Da    PI: 7.3172
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_126700_qfgr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.88.1e-38882771127
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         +a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +  
  Bv5_126700_qfgr.t1  88 PAPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSVPsq 178
                         589**************************************************************99999888867777777774444466 PP

                 TCP  89 ............................................................kaaksaakskksqksaasalnlakesrakar 119
                                                                                     +  +s++++++ q+++++++n +++s+++  
  Bv5_126700_qfgr.t1 179 lrssssyfspnfttaasasrrnffagiglssdtspssallnfqtatlnlnpgllqakqecATTTSHHHQQQHQQHHHHHHNNNNNSNNNDT 269
                         6666778888889999999999999999999999**********9*******998764432222222222222222222222222222222 PP

                 TCP 120 ararertr 127
                         + + ++++
  Bv5_126700_qfgr.t1 270 SPSSNNNN 277
                         22222111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3993280IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92395149IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDGDHHHHQQ QQQHHHDFHN HHRPNFPFQL LEKKEEEACS STTPFNPSLA ITPSGPGPST  60
STGPVQQQQQ QPQSGEGELS SGPNSKKPAP KRTSTKDRHT KVDGRGRRIR MPALCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSLSVPSQLR  180
SSSSYFSPNF TTAASASRRN FFAGIGLSSD TSPSSALLNF QTATLNLNPG LLQAKQECAT  240
TTSHHHQQQH QQHHHHHHNN NNNSNNNDTS PSSNNNNSSN NNDQLDLSEA ADEEGGGGRK  300
RRLEGEYGAA AAAAAGGYGQ IPAANFWMVT NSGNQAAAAA AVMSGDPIWT IPSVNNNAAA  360
AAAAGLYRGT VPSGLHFMNF ATPMALLPSQ QMGPTMGSGG GGGGGGHNMS SSEQAQHLGL  420
LTGLNPYRNV QGGGISDSQA SGSHSHHGDD RHDTTSHSHH S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695711.10.0PREDICTED: transcription factor TCP14
TrEMBLA0A0J8E2Z90.0A0A0J8E2Z9_BETVU; Uncharacterized protein
STRINGXP_010695711.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-45TCP family protein