PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_124720_syoe.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

TCP

Protein Properties

Length: 294aa MW: 31639.8 Da PI: 8.7487

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_124720_syoe.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.5	5.7e-39	48	135	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 a+k+++++++hTkv+gR RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai ++tg+++++as+ ++s ss+s+++++ Bv5_124720_syoe.t1 48 APKRSSNKDRHTKVDGRSRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPAILAATGSGTIPASFLaASASGASSVSQQGAS 135 789******************************************************************8887444444444433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-32	53	292	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.319	54	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNDNRNPEEK HLVSITTTTT TSTSTPTSNS SCSKEDLQKK QQIQQQLAPK RSSNKDRHTK 60 VDGRSRRIRM PALCAARVFQ LTRELGHKTD GETIQWLLQQ AEPAILAATG SGTIPASFLA 120 ASASGASSVS QQGASVSLGL HSKINDLRAG VEVANRATWG NFGDNLGRSQ SIWPSIGSGY 180 AQVFDTASNL VSQSSGYVTN FQLQGVGLPT ANMGLLSFTP ILARGAQLPG LQLGLSQDGH 240 GGVIGQIYQQ QQQQQQHHPH QSHEQSDSGA ANVEPVHQHQ QHLQSHSNDN SREQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021758425.1	1e-125	transcription factor TCP20-like
Swissprot	Q9LSD5	9e-55	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A0J8BC90	0.0	A0A0J8BC90_BETVU; Uncharacterized protein
STRING	XP_006484165.1	2e-76	(Citrus sinensis)
STRING	XP_006437974.1	2e-76	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	8e-48	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]