PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv5_122100_ygdi.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 334aa MW: 36595.5 Da PI: 6.396 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.9 | 1e-33 | 164 | 221 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+ Bv5_122100_ygdi.t1 164 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHTHP 221 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 3.1E-101 | 1 | 334 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 3.9E-34 | 148 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-29 | 155 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.94 | 158 | 223 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-39 | 163 | 222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-26 | 164 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MNNSSTTTTT STTTTTTSTT TSTTGFMELL GMQDMININP SLFDMMMMNN GYSGSNNNEV 60 FTNCMDPCAP DPTPPPLSTT SNVNLEASEV LNSNLPTTPN SSSISSASNE GLNDEQQQEE 120 EDEDEDEQQQ KAKKQSTKAK KTNQKRQREP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS 180 PFPRSYYRCT SASCNVKKRV ERSYTDPSIV VTTYEGQHTH PCTVLPRGAM PSPGFGSGIG 240 IRAGAGAASP FALPMQMANS NHFQMNYISS LVPHQLNHFG NLPSSNTSTN TNNNTNTNTS 300 VVTSCSRLAP VSAALLRDHG LLQDIVPSIM KKEE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-26 | 156 | 220 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-26 | 156 | 220 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU984040 | 1e-51 | GU984040.1 Cucumis sativus WRKY protein (WRKY55) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679416.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
TrEMBL | A0A0K9RLH1 | 1e-117 | A0A0K9RLH1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679416.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-45 | WRKY DNA-binding protein 23 |