PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_120440_dtcx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 351aa    MW: 38730.7 Da    PI: 10.2011
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_120440_dtcx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32285342359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  Bv5_120440_dtcx.t1 285 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGDHNHP 342
                         9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-18236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.0E-34271343IPR003657WRKY domain
PROSITE profilePS5081130.205278344IPR003657WRKY domain
SuperFamilySSF1182903.01E-27281343IPR003657WRKY domain
SMARTSM007748.2E-39283343IPR003657WRKY domain
PfamPF031062.3E-27285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEGVEEANKA AVESCHRVLS IISQPQDQNH FRNLAAETQQ SVTKFKRVVS LLSKGIGHGR  60
ARIVKNRSTP FHQSIFLESS NGPKVEPSCS SQPVKALQLL KTNLNEGLIQ ENGSTTGKSC  120
LSLGGNLSLE MSSSGKTPLQ LHHPSSTAHY QLFQQQKLQQ LQQQQQLKHQ TEMLYRRSNS  180
GINLNFDSSN CTPTMSSTRS FISSLSVDGS VANLDGSGFN LIGVSHSSDQ LLSQHRKRCS  240
GKGEDGSVKC GSSGRCHCSK KRKHRVKRSI KVPAISNKLA DIPPDEYSWR KYGQKPIKGS  300
PHPRGYYKCS SMRGCPARKH VERCLEDPSM LIVTYEGDHN HPRLPSQSAN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202793451075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679182.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-114WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0K9S1G10.0A0A0K9S1G1_SPIOL; Uncharacterized protein
STRINGXP_010679182.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-101WRKY DNA-binding protein 39