PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_115440_dggo.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | LBD | ||||||||
Protein Properties | Length: 268aa MW: 30733.2 Da PI: 6.7887 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.8 | 4.4e-39 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkC++ C+lapyfp +q+k f+nvhklFG+++++kllk l+++++++amss++y+A++r r PvyG+v+vi++l++q++q + Bv5_115440_dggo.t1 10 ACAACKYQRRKCTSTCPLAPYFPPDQHKMFQNVHKLFGVKKIQKLLKLLHPSQHNEAMSSIIYQANIRERSPVYGCVEVIQHLRNQIRQCE 100 7****************************************************************************************** PP DUF260 92 aelallke 99 +el ++++ Bv5_115440_dggo.t1 101 EELYAVHS 108 **998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.217 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MTLKGGNNQA CAACKYQRRK CTSTCPLAPY FPPDQHKMFQ NVHKLFGVKK IQKLLKLLHP 60 SQHNEAMSSI IYQANIRERS PVYGCVEVIQ HLRNQIRQCE EELYAVHSML NTYRHQHDHQ 120 QISTNVVSFT DINSASQLQL GMGPPSNIIP SFYNQNTAVL QQHYNSENVV PLSQNHSYSS 180 SSSPYHSSYL DVKEPLLNSM WIQHPGIHDN TNSENENAIP IQSELVITSE SPAFQENAFQ 240 DYNDMHPYFD TIDDRQSYID SKVAYDSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-30 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-30 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678608.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A2C9UJM3 | 2e-91 | A0A2C9UJM3_MANES; Uncharacterized protein | ||||
STRING | XP_010678608.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 8e-45 | LOB domain-containing protein 27 |