PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_114390_pjnp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 361aa MW: 40682.4 Da PI: 6.1805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_114390_pjnp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.1	6.8e-57	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++kv ++++++ ++i evd++k+ePwdLpk++k +ekewyfF+ rd+ky+tg r+nrat +gyWkatgkdke Bv5_114390_pjnp.t1 16 LPPGFRFHPTDEELISHYLAPKVVDNDFSA-RAIGEVDLNKCEPWDLPKRAKMGEKEWYFFCVRDRKYPTGLRTNRATVAGYWKATGKDKE 105 79*************************9.89***********99999********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgek++Wvmheyrle Bv5_114390_pjnp.t1 106 IYR-GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 142 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.053	16	166	IPR003441	NAC domain
Pfam	PF02365	4.1E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MENMADLANE QEPMDLPPGF RFHPTDEELI SHYLAPKVVD NDFSARAIGE VDLNKCEPWD 60 LPKRAKMGEK EWYFFCVRDR KYPTGLRTNR ATVAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKTSLQNL PSNARNEWVI CRVFQKSAAG KKLPFLGLTR 180 SDSFGNEFNP SSNLPPLMDS SPYNTNYGGA SSHVPCFSNT METNPQTSHY QNTNQPSYDG 240 LINNPYNSIP LNSSENPYFP RFGGMNPFLP SQTGSYSGNY MLSDQHILKA ILENHGTEMK 300 QSMKTEAVNY SASQDTGLSS DMNAEISSVV SNYDMGRRPF DDPDEPSTSG GPIDLDTLWN 360 Y

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MENMADLANE QEPMDLPPGF RFHPTDEELI SHYLAPKVVD NDFSARAIGE VDLNKCEPWD  60
LPKRAKMGEK EWYFFCVRDR KYPTGLRTNR ATVAGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYKGRAPKGE KSNWVMHEYR LEGKTSLQNL PSNARNEWVI CRVFQKSAAG KKLPFLGLTR  180
SDSFGNEFNP SSNLPPLMDS SPYNTNYGGA SSHVPCFSNT METNPQTSHY QNTNQPSYDG  240
LINNPYNSIP LNSSENPYFP RFGGMNPFLP SQTGSYSGNY MLSDQHILKA ILENHGTEMK  300
QSMKTEAVNY SASQDTGLSS DMNAEISSVV SNYDMGRRPF DDPDEPSTSG GPIDLDTLWN  360
Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	14	172	18	174	NAC domain-containing protein 19
3swm_B	1e-55	14	172	18	174	NAC domain-containing protein 19
3swm_C	1e-55	14	172	18	174	NAC domain-containing protein 19
3swm_D	1e-55	14	172	18	174	NAC domain-containing protein 19
3swp_A	1e-55	14	172	18	174	NAC domain-containing protein 19
3swp_B	1e-55	14	172	18	174	NAC domain-containing protein 19
3swp_C	1e-55	14	172	18	174	NAC domain-containing protein 19
3swp_D	1e-55	14	172	18	174	NAC domain-containing protein 19
4dul_A	1e-55	14	172	15	171	NAC domain-containing protein 19
4dul_B	1e-55	14	172	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678483.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-143	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1B2RWC9	0.0	A0A1B2RWC9_9CARY; NAC transcription factor 15
STRING	XP_010678483.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-145	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]