PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_113850_utth.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 563aa    MW: 62233.3 Da    PI: 8.6577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_113850_utth.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012429451123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C ++F++   L  H r+H
  Bv5_113850_utth.t1 429 HECPICYRVFPSGQALGGHKRSH 451
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.4830IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.6E-6830No hitNo description
PfamPF139120.072831IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-6343370No hitNo description
SMARTSM003550.06348370IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536348370IPR007087Zinc finger, C2H2
PfamPF139125.4E-12348372IPR007087Zinc finger, C2H2
PROSITE patternPS000280350370IPR007087Zinc finger, C2H2
SMARTSM003550.16429451IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-13429451IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891429451IPR007087Zinc finger, C2H2
PROSITE patternPS000280431451IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEVQKLKHVC KFCKKCFPCG RSLGGHIRSH LPKPGYELRE NPKKTWRVTR RDELLLNSSF  60
SSSSTETENR KSRTIKNHVQ GKRSTIGRNN SHSSVSEVVE DDHQEQEQEQ EQEEVVVAMC  120
LIMLSQDEGS WGDISSSFAV AADSSENNNV SFFSQGNNNS KSRRRKRREK VQVNENDSVS  180
VGVNAKKFES VASGYLQKEL KLKGIEVSAN GFCLNDQNNK CFESKKRREK VEGKESVFGA  240
TDHYVGKIIK AESAVSGYVK DGAKIKEYEV SENGFVSNDH IKQSFESKRK IAQSVTSRCV  300
KKGSKIEEYE VSENGISLYD QKNIDHNELD SEFYNDVSRT SCFKRSKFEC TTCNKVFHSY  360
QALGGHRASH KKLLGGGKCS PPSPKLEPSN VAGNDASISP THKQQEQLVS EMGIGSSSSS  420
STKKVVQKHE CPICYRVFPS GQALGGHKRS HLLVANNNDE INGRVSEGKI NDNHVRIAQV  480
VERLASTETR DLLDLNFPPA QDEATATATA TATTTTTATA TTTTTTTATT TPSSSASLVG  540
FIKPYWCVES SHKHEPLLGL ISN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RKRREK
2224229KKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678415.10.0PREDICTED: uncharacterized protein LOC104893969
TrEMBLA0A0K9S1441e-159A0A0K9S144_SPIOL; Uncharacterized protein
STRINGXP_010678415.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-21C2H2-like zinc finger protein