PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_110170_udmh.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 293aa    MW: 33353.9 Da    PI: 5.0784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_110170_udmh.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +++++G+g+W++++     + R+ k+c++rw +yl
  Bv5_110170_udmh.t2 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTVgLQRCSKSCRLRWTNYL 62
                        79**************************98888**************97 PP
2Myb_DNA-binding461.2e-1468113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Bv5_110170_udmh.t2  68 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-25565IPR009057Homeodomain-like
PROSITE profilePS5129424.872966IPR017930Myb domain
SuperFamilySSF466891.16E-3011109IPR009057Homeodomain-like
SMARTSM007176.6E-131364IPR001005SANT/Myb domain
PfamPF002493.6E-151462IPR001005SANT/Myb domain
CDDcd001676.42E-111662No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2566118IPR009057Homeodomain-like
SMARTSM007173.5E-1367115IPR001005SANT/Myb domain
PROSITE profilePS5129418.7567117IPR017930Myb domain
PfamPF002494.8E-1368113IPR001005SANT/Myb domain
CDDcd001673.19E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRPPCCDKD GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTVGLQRC SKSCRLRWTN  60
YLRPGIKRGN FTPHEEGMII HLQALLGNKW AAIASYLPQR TDNDIKNYWN THLKKKLKRF  120
QSAFQTQEPQ LPGTTSTSSS PHYKFGNDDN VATQPQLTST CYASSTENIS RLLESWMKCS  180
PISNPKHHDN DDNNNNNTSY HGGCVGEQDD HFETLMSFDN LNDHKESMVT TTCDSVEEDI  240
INEGGNKVNE NIDSMEEDDE NNPPLTFLEK WLLDESTTSR QVTEEILRLP SMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677864.10.0PREDICTED: myb-related protein 306 isoform X1
SwissprotB3VTV71e-106MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0J8CGN00.0A0A0J8CGN0_BETVU; Uncharacterized protein
STRINGXP_010677864.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-97myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]