PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_110160_ztyd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 231aa    MW: 26628.5 Da    PI: 7.825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_110160_ztyd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
  Bv5_110160_ztyd.t1 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62
                        79********************************************97 PP
2Myb_DNA-binding55.71.1e-1768111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Bv5_110160_ztyd.t1  68 RGNITAEEELLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-24765IPR009057Homeodomain-like
PROSITE profilePS5129416.0961062IPR017930Myb domain
SuperFamilySSF466895.24E-3013109IPR009057Homeodomain-like
SMARTSM007171.0E-121464IPR001005SANT/Myb domain
PfamPF002493.8E-161562IPR001005SANT/Myb domain
CDDcd001673.16E-101762No hitNo description
PROSITE profilePS5129425.56963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2566118IPR009057Homeodomain-like
SMARTSM007171.6E-1567115IPR001005SANT/Myb domain
PfamPF002492.5E-1668111IPR001005SANT/Myb domain
CDDcd001671.11E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEKRQNNSQD NEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITAEEELLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHLKQA  120
ESSTSTTTTT SRQMSSPDQN NHDQICASQM STASASTPST HYISSSNNQN DPPYLPSISS  180
SSYPHLDHHH QAMEATSYNI VPPQMHPVTN DHFWPTPDED LWAMQLFNSY N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677862.11e-174PREDICTED: myb-related protein 305
SwissprotP813917e-86MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0J8CCE71e-172A0A0J8CCE7_BETVU; Uncharacterized protein
STRINGXP_010677862.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-75myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]