PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_107890_dxat.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 370aa    MW: 42868.4 Da    PI: 6.9343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_107890_dxat.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-1425117198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         ffkv    ++  ++ l +p  f e+ +gk   +  ++l+ +s    +W+v+l+ +    r + ++GW++Fv a  L+e+D++vFk++++s 
  Bv5_107890_dxat.t1  25 FFKVD--LHADFRSGLEIPLYFSENVKGK--LHHNVVLKGPSAdiDTWDVQLKTNDDTTR-FVGEGWQDFVTAFSLEENDSLVFKYKNNSY 110
                         56666..555556679******9888887..6668*****99999*******65555555.5688*********************99899 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                         f  +v++f+
  Bv5_107890_dxat.t1 111 F--KVRIFD 117
                         9..999997 PP
2B3383e-12262350187
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         ff +l++s+v+ +  l +pk+  +++ + k  +sk l+l+ ++   ++ +l +   +++ ++ ++t+GWk+Fv+ n L e D +vF+ d+ 
  Bv5_107890_dxat.t1 262 FFVALSRSHVSGTMKLGIPKQWWSDFvKAK--SSKHLVLRLKDELDYDPQLYFccyDGSNSSGTITTGWKNFVQKNSLYEFDCCVFSIDKP 350
                         8999*******************9995433..667788888888778777744555777777889*********************97764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.66123119IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-1723117IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1425119IPR003340B3 DNA binding domain
CDDcd100171.01E-1525117No hitNo description
Gene3DG3DSA:2.40.330.102.2E-1725118IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-1225118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-12258351IPR015300DNA-binding pseudobarrel domain
CDDcd100179.73E-11261366No hitNo description
SuperFamilySSF1019369.42E-12261351IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0089262363IPR003340B3 DNA binding domain
PfamPF023624.4E-10262350IPR003340B3 DNA binding domain
PROSITE profilePS508638.797262361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLRRGSSTNA RTREEILYWR NLNPFFKVDL HADFRSGLEI PLYFSENVKG KLHHNVVLKG  60
PSADIDTWDV QLKTNDDTTR FVGEGWQDFV TAFSLEENDS LVFKYKNNSY FKVRIFDGKT  120
SCEKESSHFV IKSVSNRTKE SCSPVQNTQS FKQEIESEGE KIRHNDYYSS IVGGLKEIES  180
DDSDDQPLVF RRREIPKIGG LKEMESNDSD DPPLLFSRRV IPKIEPEGGY MYPLRSREHT  240
AKEIERVRQQ AKEIQRLTKN SFFVALSRSH VSGTMKLGIP KQWWSDFVKA KSSKHLVLRL  300
KDELDYDPQL YFCCYDGSNS SGTITTGWKN FVQKNSLYEF DCCVFSIDKP LEENCVFIPL  360
EVQIIRAMLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677479.10.0PREDICTED: B3 domain-containing protein REM16 isoform X2
TrEMBLA0A0K9RET41e-127A0A0K9RET4_SPIOL; Uncharacterized protein
STRINGXP_010677478.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-29B3 family protein