PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_103040_exem.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | C3H | ||||||||
Protein Properties | Length: 256aa MW: 28844.1 Da PI: 9.4968 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 194 | 216 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++ +tG+C yGd+CkF+H+ Bv5_103040_exem.t1 194 DICKDYKETGYCGYGDSCKFMHD 216 79********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.01E-9 | 189 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 190 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-7 | 190 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-12 | 191 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-10 | 193 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSDSYAKLEL QKLVPVCNFV RKPMKNKNIR KRPSALDEVE DDDKESSVLH TAKRADVSDN 60 KLYFSSGTSK RSASAESTKS SKNVLFQYES SKEIQVQNDS KATATLETET DFSRDARAIR 120 ERALKKAEEA LKGKGKSKTS GDGKVYKGIN SYTDYRAGFR REQTLAAEKA GGAHGPLRAS 180 AHIRVSARFD FQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DDAEKLRKRN 240 LALGGHSDED NAEHKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 9e-37 | 84 | 233 | 98 | 239 | RING finger protein 113A |
5z58_M | 9e-37 | 84 | 233 | 98 | 239 | RING finger protein 113A |
6ff4_t | 9e-37 | 84 | 233 | 98 | 239 | RING finger protein 113A |
6ff7_t | 9e-37 | 84 | 233 | 98 | 239 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019104756.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X2 | ||||
Swissprot | Q8GX84 | 1e-110 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A0J8B5U2 | 1e-163 | A0A0J8B5U2_BETVU; Uncharacterized protein | ||||
STRING | XP_010667731.1 | 1e-164 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-89 | C3H family protein |