PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_099870_ypwu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 281aa    MW: 32016.4 Da    PI: 6.6027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_099870_ypwu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.3e-29134191359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D++nWrKYG K++kgs++prsYYrC+++ gC+++k+ve+s++dp ++ itY +eHnh+
  Bv5_099870_ypwu.t1 134 DKWNWRKYGEKVIKGSPYPRSYYRCSYPgGCSARKQVEQSTSDPGLFLITYMEEHNHP 191
                         9***************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-28122193IPR003657WRKY domain
PROSITE profilePS5081129127193IPR003657WRKY domain
SuperFamilySSF1182901.2E-25131193IPR003657WRKY domain
SMARTSM007742.5E-31132192IPR003657WRKY domain
PfamPF031062.0E-24134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MMSEFSFDRT SDWDLHAVVK GRSITTTTNT MYNIMPSYDA WIESLSNENE AVEFNELQQL  60
SCESSSTISP QKIVDSSSSM MMSFDLYTKS PTHEPKEKPI DNHTRAITIS KRRKNKHKII  120
KVVQQEGGDR VLCDKWNWRK YGEKVIKGSP YPRSYYRCSY PGGCSARKQV EQSTSDPGLF  180
LITYMEEHNH PYPTRRHSQA GRSARRFNNN HATSKAITTN ESQNTLNLVR SSTNLEPSLN  240
NDGVFALRGD DDDGSAGFVG ENDDFFAGLD YLEGLHMDFY N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-19118194480Disease resistance protein RRS1
5w3x_D6e-19118194480Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676412.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A0K9S1611e-110A0A0K9S161_SPIOL; Uncharacterized protein
STRINGXP_010676412.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-30WRKY family protein