PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_099120_wmfg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 368aa    MW: 41395.1 Da    PI: 6.1311
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_099120_wmfg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.7e-28137197259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK++ g+++prsYYrCt++   gC ++k+v+r++edp +++itY+g+H+++
  Bv5_099120_wmfg.t1 137 EDGYSWRKYGQKDILGATYPRSYYRCTYRklqGCYATKQVQRNDEDPMLFDITYKGTHTCT 197
                         7***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-29124197IPR003657WRKY domain
PROSITE profilePS5081122.194131199IPR003657WRKY domain
SuperFamilySSF1182907.72E-26132198IPR003657WRKY domain
SMARTSM007745.2E-39136198IPR003657WRKY domain
PfamPF031061.1E-26137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MKMELNAGRN YEQHSLAGEL TEGIELAKRL KAHMSTEVHA KETKGMLAER IYSCFQNALV  60
ILNMSGLMEQ SHQHVVPSST MPESPLSVIG SPKSEDINPA SYTQQDDRDL SKKRKMMPTW  120
TEQVKAISEN TTEGPPEDGY SWRKYGQKDI LGATYPRSYY RCTYRKLQGC YATKQVQRND  180
EDPMLFDITY KGTHTCTLAP RSKSAPTSPQ KKAYNKQSHA PITVYHHQPD MLLNFQTGLR  240
VDIQNLENQE TGFLFPTQGF GSENLGFTPS STLKDSYPYN NITQSFIQSP ATSESTYFST  300
SPCNMSSFGG VHYGQHSESE IPDIISATTS GANSPMIDID FTLNQWECYP NFVSDNQAFP  360
TNFSEPKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-171381941874Disease resistance protein RRS1
5w3x_D5e-171381941874Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676319.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0K9RJ400.0A0A0K9RJ40_SPIOL; Uncharacterized protein
STRINGXP_010676319.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-55WRKY family protein